Gene omics information

Query gene ID	PtpAffx.127528.1.A1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	94.9	PtpAffx.127528.1.A1_s_at	CV255049	hypothetical protein	-	1e-10	At5g28020	CYSD2 (CYSTEINE SYNTHASE D2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.20179.1.A1_at	CV272190	hypothetical protein	-	8e+0	At5g62840	phosphoglycerate/bisphosphoglycerate mutase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.205928.1.S1_s_at	pmrna11764	hypothetical protein	-	6e-37	At1g03370	protein binding / zinc ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.17241.1.S1_at	CV273681	hypothetical protein	-	1e-5	At1g76470	3-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductase	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.68101.1.S1_s_at	CV238573	hypothetical protein	-	6e+0	At4g31240	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	Ptp.5155.1.S1_s_at	CK092489	hypothetical protein	-	5e+0	At5g32619	-	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.1	99.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
8.7	98.6	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
7.5	98.3	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.3	97.7	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.2	96.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.2	96.8	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.9	95.1	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	1316	PtpAffx.127528.1.A1_at	CV255049	hypothetical protein	-	1e-10	At5g28020	CYSD2 (CYSTEINE SYNTHASE D2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.61	0	914	Ptp.6092.1.S1_at	BU816638	-	-	9e-19	At5g28020	CYSD2 (CYSTEINE SYNTHASE D2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.42	6e-35	149	PtpAffx.220211.1.S1_s_at	pmrna36568	hypothetical protein	-	1e-25	At3g04940	CYSD1 (CYSTEINE SYNTHASE D1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	3e-18	93	PtpAffx.54760.1.A1_at	DN488946	hypothetical protein	-	3e-11	At5g28020	CYSD2 (CYSTEINE SYNTHASE D2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.26	7e-13	75	PtpAffx.210969.1.S1_at	pmrna21549	hypothetical protein	-	1e+0	At5g03530	RABC2A (RAB GTPASE HOMOLOG C2A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	7e-10	65	Ptp.1022.1.S1_at	AY353092.1	hypothetical protein	-	3e-43	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	7e-10	65	Ptp.1022.1.S1_x_at	AY353092.1	hypothetical protein	-	3e-43	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	1e-8	61	PtpAffx.112057.1.S1_s_at	CV240582	-	-	3e-14	At5g28020	CYSD2 (CYSTEINE SYNTHASE D2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	6e-7	56	PtpAffx.28933.1.S1_at	DN495691	-	-	4e-15	At3g04940	CYSD1 (CYSTEINE SYNTHASE D1)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	1e-10	67	Arabidopsis thaliana	At5g28020	832872	CYSD2 (CYSTEINE SYNTHASE D2)	Encodes cysteine synthase CysD2.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.27	7e-19	95	Glycine max	Gma.6807.1.S1_at	BM307255	-	-	1e-4	At5g28020	CYSD2 (CYSTEINE SYNTHASE D2)	C.G.	S.X.	Please select
0.04	5e-2	38	Hordeum vulgare	Contig1285_s_at	Contig1285	-	-	4e-20	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	C.G.	S.X.	Please select
0.09	8e-1	36	Oryza sativa	Os03g0747800	CR279243	-	Cysteine synthase (EC 2.5.1.47) (O-acetylserinesulfhydrylase) (O- acetylserine (Thiol)-lyase) (CSase)(OAS-TL)	9e-22	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	2e-3	44	Triticum aestivum	Ta.17169.1.S1_at	CA618461	-	-	2e-2	At2g43750	OASB (O-ACETYLSERINE (THIOL) LYASE B)	C.G.	S.X.	Please select
0.24	2e-22	105	Vitis vinifera	1611652_s_at	CF208983	hypothetical protein LOC100264196	-	2e-53	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	C.G.	S.X.	Please select
0.05	7e-4	44	Zea mays	Zm.14329.1.A1_at	CF635471	cysteine synthase2	-	2e-13	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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