Gene omics information

Query gene ID	PtpAffx.12741.1.A1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	84.2	PtpAffx.12741.1.A1_at	CV234093	-	-	8e-2	At4g08230	glycine-rich protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.100467.1.S1_at	CX657915	hypothetical protein	-	8e-40	At4g16144	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	Ptp.1847.1.A1_s_at	CK093485	hypothetical protein	-	7e-17	At2g23070	casein kinase II alpha chain, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.48244.1.A1_at	DN491049	hypothetical protein	-	9e-5	At2g37160	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.1338.1.A1_at	CV245431	-	-	2e-55	At5g03730	CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.6505.1.A1_s_at	CV238517	hypothetical protein	-	2e-36	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.9	98.9	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
8.4	98.6	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
7.2	98.1	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7	85.5	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.93	0	1053	PtpAffx.12741.1.A1_a_at	CV234093	hypothetical protein	-	8e-2	At4g08230	glycine-rich protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.50	6e-142	504	Ptp.7060.1.A1_at	CV262139	hypothetical protein	-	9e-27	At1g23290	RPL27AB	C.G.	S.X.	Please selecteFP Browser (expression)
0.50	6e-142	504	Ptp.7060.1.A1_x_at	CV262139	hypothetical protein	-	9e-27	At1g23290	RPL27AB	C.G.	S.X.	Please selecteFP Browser (expression)
0.50	6e-142	504	Ptp.7060.1.A1_s_at	CV262139	hypothetical protein	-	9e-27	At1g23290	RPL27AB	C.G.	S.X.	Please selecteFP Browser (expression)
0.51	2e-105	383	PtpAffx.12741.2.A1_at	CV273182	hypothetical protein	-	4e+0	At4g12590	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.210731.1.S1_at	pmrna21051	hypothetical protein	-	1e-12	At3g49060	protein kinase family protein / U-box domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.16590.1.A1_at	BP932604	hypothetical protein	-	5e+0	At5g65670	IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.157406.1.S1_at	CK102418	hypothetical protein	-	3e-15	At5g58090	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e+0	32	PtpAffx.56951.1.S1_at	CV244657	hypothetical protein	-	6e-5	At5g22820	binding	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	8e-2	38	Arabidopsis thaliana	At4g08230	826373	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	1e-35	151	Glycine max	Gma.5710.1.S1_at	AI442566	-	-	7e-5	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.04	1e-2	40	Hordeum vulgare	Contig4804_at	Contig4804	-	-	1e-1	At1g72600	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.22	1e-11	71	Oryza sativa	Os03g0263700	AK071748.1	-	Conserved hypothetical protein	5e+0	At5g06020	self-incompatibility protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	9e-8	57	Triticum aestivum	Ta.17270.1.S1_at	CA619221	-	-	1e+0	At2g45420	LBD18 (LOB DOMAIN-CONTAINING PROTEIN 18)	C.G.	S.X.	Please select
0.41	5e-56	216	Vitis vinifera	1622126_at	CF568916	-	-	7e-8	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.13	4e-8	57	Zea mays	Zm.7704.1.A1_at	BM079575	hypothetical protein LOC100278612	-	5e-3	At1g62240	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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