CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.127059.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.127059.1.A1_at CV258719 hypothetical protein - 1e-4 At1g66270 BGLU21 S.X. H.G.
0.80 96.0 PtpAffx.209537.1.S1_at pmrna18896 hypothetical protein - 1e+0 At3g59250 F-box family protein S.X. H.G.
0.80 96.0 PtpAffx.200185.1.S1_at pmrna342 hypothetical protein - 8e-4 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) S.X. H.G.
0.73 93.6 PtpAffx.162331.1.S1_at CA821362 - - 1e+0 At4g11640 ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE) S.X. H.G.
0.50 78.6 PtpAffx.212416.1.S1_at pmrna24321 hypothetical protein - 5e-1 At2g43350 ATGPX3 (GLUTATHIONE PEROXIDASE 3) S.X. H.G.
0.36 61.6 PtpAffx.200185.1.S1_s_at pmrna342 hypothetical protein - 8e-4 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
69.9 100.0 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
13.7 99.4 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
6.4 97.7 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327359 Populus balsamifera_20071015_Seedling_continuous_light_6d_3 GSE13990 Populus balsamifera developmental tissue series
0.7 69.4 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
0.5 63.3 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
0.5 63.3 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
0.2 49.7 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
0.0 33.6 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
0.0 33.6 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 0 712 PtpAffx.200185.1.S1_s_at pmrna342 hypothetical protein - 8e-4 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) C.G. S.X.
0.51 0 712 PtpAffx.200185.1.S1_at pmrna342 hypothetical protein - 8e-4 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) C.G. S.X.
0.10 2e-16 87 PtpAffx.203906.1.S1_at pmrna7716 hypothetical protein - 1e-5 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) C.G. S.X.
0.03 4e-5 50 PtpAffx.200551.1.S1_at pmrna1094 hypothetical protein - 5e-8 At3g60120 BGLU27 (BETA GLUCOSIDASE 27) C.G. S.X.
0.04 6e-4 46 PtpAffx.29632.1.S1_at CX654220 - - 2e-3 At3g18080 BGLU44 (B-S GLUCOSIDASE 44) C.G. S.X.
0.10 2e-3 44 PtpAffx.225133.1.S1_at pmrna44255 hypothetical protein - 2e-2 At2g44470 BGLU29 (BETA GLUCOSIDASE 29) C.G. S.X.
0.06 2e-3 44 Ptp.5965.1.S1_s_at CX169141 hypothetical protein - 2e-4 At3g60120 BGLU27 (BETA GLUCOSIDASE 27) C.G. S.X.
0.06 2e-3 44 Ptp.5965.1.S1_at CX169141 hypothetical protein - 2e-4 At3g60120 BGLU27 (BETA GLUCOSIDASE 27) C.G. S.X.
0.02 6e-1 36 PtpAffx.205311.1.S1_at pmrna10526 hypothetical protein - 4e-1 At2g17680 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-4 48 Arabidopsis thaliana At1g66270 842944 BGLU21 F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellular response to phosphate starvation, response to salt stress;C:vacuole, membrane;BOPMFA - - - C.G. S.X.
0.04 1e-2 42 Glycine max Gma.2241.1.A1_at AW350857 - - 4e-6 At1g51490 BGLU36 (BETA GLUCOSIDASE 36) C.G. S.X.
0.02 3e+0 32 Hordeum vulgare HA03B13u_s_at HA03B13u - - 8e-4 At5g67560 ATARLA1D (ADP-ribosylation factor-like A1D) C.G. S.X.
0.04 2e-1 38 Oryza sativa Os.8442.1.S1_at - - - 0 C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.12702.1.S1_at BJ243315 - - 4e-22 At2g35840 sucrose-phosphatase 1 (SPP1) C.G. S.X.
0.13 1e-7 56 Vitis vinifera 1610346_at CF517350 hypothetical protein LOC100264751 - 2e+1 At5g62065 lipid binding C.G. S.X.
0.02 7e-1 34 Zea mays Zm.12792.1.A1_at CA398944 hypothetical protein LOC100272306 - 4e-1 At1g69040 ACR4 (ACT REPEAT 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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