Gene omics information

Query gene ID	PtpAffx.126959.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	84.2	PtpAffx.126959.1.A1_at	CV277847	hypothetical protein	-	4e+0	At4g36925	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.203561.1.S1_at	pmrna7069	hypothetical protein	-	2e-21	At3g27890	NQR (NADPH:QUINONE OXIDOREDUCTASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	Ptp.1105.2.A1_s_at	BP936421	hypothetical protein	-	7e-1	At4g32030	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.1215.1.A1_at	CK090318	cytochrome P450 /// cytochrome P450 /// cytochrome P450	-	3e+0	At1g66540	cytochrome P450, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.37	62.3	PtpAffx.221180.1.S1_at	pmrna37857	hypothetical protein	-	2e-66	At5g09890	protein kinase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.56585.1.S1_at	CV259403	hypothetical protein	-	9e-1	At3g57072	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.147103.1.A1_at	CV251110	thioredoxin h	-	2e+0	At2g41160	ubiquitin-associated (UBA)/TS-N domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.216835.1.S1_at	pmrna31873	hypothetical protein	-	3e-9	At5g55570	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.7	99.6	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
14.8	99.5	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
10.0	98.9	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.8	97.4	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.5	97.1	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.3	95.8	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.3	95.8	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	3e-57	222	PtpAffx.207104.1.S1_at	pmrna14081	hypothetical protein	-	2e-1	At4g23271	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.41	6e-49	194	PtpAffx.133294.1.A1_at	CV283606	hypothetical protein	-	3e+0	At5g21430	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-2	38	PtpAffx.203138.1.S1_at	pmrna6222	hypothetical protein	-	2e-4	At4g19460	glycosyl transferase family 1 protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e-1	36	PtpAffx.204853.1.S1_at	pmrna9590	hypothetical protein	-	1e-1	At2g22320	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.6581.6.S1_a_at	CV253716	hypothetical protein	-	3e-2	At4g00270	DNA-binding storekeeper protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.6581.11.S1_at	CV240975	-	-	2e-2	At4g00270	DNA-binding storekeeper protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.215624.1.S1_at	pmrna29916	hypothetical protein	-	1e-1	At4g10845	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.204812.1.S1_at	pmrna9487	hypothetical protein	-	3e-63	At5g19390	pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e+0	32	PtpAffx.90182.1.S1_at	CV264684	hypothetical protein	-	2e-2	At5g66870	ASL1	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At4g36925	829846	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e+0	34	Glycine max	PsAffx.C16000024_s_at	PsAffx.C16000024	-	-	5e+0	At4g27140	2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1	C.G.	S.X.	Please select
0.03	8e+0	30	Hordeum vulgare	Contig22348_at	Contig22348	-	-	1e+1	At5g52250	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	Os06g0186000	AK119326.1	-	Protein kinase-like domain containing protein	2e-3	At5g49660	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Triticum aestivum	TaAffx.6606.2.A1_at	CA680903	-	-	4e+0	At4g01265	raffinose synthase family protein / seed imbibition protein-related	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1622291_at	CF518951	hypothetical protein LOC100266558	-	2e-1	At2g31670	-	C.G.	S.X.	Please select
0.03	4e-1	34	Zea mays	Zm.6385.1.S1_at	AI691649	-	-	8e-2	At5g25600	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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