CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.126851.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 82.2 PtpAffx.126851.1.A1_at CV283322 hypothetical protein - 6e+0 At5g06890 - S.X. H.G.
0.40 67.0 PtpAffx.132173.1.A1_at DN487132 - - 7e-3 At3g07920 translation initiation factor S.X. H.G.
0.17 29.1 PtpAffx.200282.1.S1_at pmrna560 hypothetical protein - 6e-1 At2g25840 OVA4 (ovule abortion 4) S.X. H.G.
0.10 16.3 PtpAffx.205140.1.S1_at pmrna10177 hypothetical protein - 5e-1 At2g40440 BTB/POZ domain-containing protein S.X. H.G.
0.04 6.9 PtpAffx.108515.1.A1_at CV237662 - - 3e+0 At5g19240 unknown protein S.X. H.G.
0.03 5.2 Ptp.3185.1.S1_at AF480620.1 phenylalanine amonnia lyase - 2e-33 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) S.X. H.G.
0.02 3.6 PtpAffx.220848.1.S1_x_at pmrna37298 hypothetical protein - 2e+0 At5g04120 phosphoglycerate/bisphosphoglycerate mutase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.7 98.3 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.3 97.7 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.1 97.6 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.8 96.4 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.6 96.2 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.1 95.5 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1 95.5 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0 95.3 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9 95.1 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5 94.3 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.64 5e-75 282 Ptp.3941.1.S1_at CV230881 hypothetical protein - 8e-40 At5g40950 RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) C.G. S.X.
0.02 1e-1 38 PtpAffx.66419.2.A1_at CV280833 - - 2e+0 At3g49860 ATARLA1B (ADP-ribosylation factor-like A1B) C.G. S.X.
0.02 5e-1 36 PtpAffx.4387.1.A1_s_at CV279497 hypothetical protein - 3e-15 At5g06110 DNAJ heat shock N-terminal domain-containing protein / cell division protein-related C.G. S.X.
0.02 5e-1 36 PtpAffx.42102.1.S1_s_at DN485776 hypothetical protein - 6e-1 At3g49860 ATARLA1B (ADP-ribosylation factor-like A1B) C.G. S.X.
0.02 5e-1 36 PtpAffx.42102.1.S1_at DN485776 hypothetical protein - 6e-1 At3g49860 ATARLA1B (ADP-ribosylation factor-like A1B) C.G. S.X.
0.03 5e-1 36 PtpAffx.224559.1.S1_at pmrna43206 hypothetical protein - 7e-11 At1g22130 AGL104 (AGAMOUS-LIKE 104) C.G. S.X.
0.02 5e-1 36 PtpAffx.204176.1.S1_at pmrna8225 hypothetical protein - 2e-16 At5g15510 - C.G. S.X.
0.01 5e-1 36 PtpAffx.203584.1.S1_at pmrna7116 hypothetical protein - 1e-32 At3g11450 DNAJ heat shock N-terminal domain-containing protein / cell division protein-related C.G. S.X.
0.01 2e+0 34 PtpAffx.86393.1.S1_s_at CV264156 hypothetical protein - 2e-81 At3g23300 dehydration-responsive protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e+0 32 Arabidopsis thaliana At5g06890 830579 - F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;P - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.53053.1.S1_at AW508962 - - 1e-24 At1g72440 EDA25 (embryo sac development arrest 25) C.G. S.X.
0.07 3e+0 32 Hordeum vulgare Contig8437_at Contig8437 - - 1e-1 At5g40950 RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) C.G. S.X.
0.02 2e-1 38 Oryza sativa OsAffx.30149.1.S1_s_at - - - 0 C.G. S.X.
0.03 6e+0 32 Triticum aestivum Ta.10518.2.S1_at BJ317269 - - 3e-1 At1g43190 polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1618238_at CB339270 - - 2e-1 At1g79040 PSBR (photosystem II subunit R) C.G. S.X.
0.03 6e-1 34 Zea mays Zm.1661.1.A1_at BM079681 50S ribosomal protein L27 - 5e-1 At1g15840 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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