Gene omics information

Query gene ID PtpAffx.1258.4.S1_s_at
Gene name actin 1 /// actin 9
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4673.7PtpAffx.1258.4.S1_s_atCF232778actin 1 /// actin 9-0At5g09810ACT7 (ACTIN 7)S.X.H.G.
0.6187.0PtpAffx.4784.1.A1_s_atCV268464hypothetical protein-8e+0At5g27290unknown proteinS.X.H.G.
0.5784.2PtpAffx.21710.1.S1_s_atCV230014hypothetical protein-8e-120At1g10630ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)S.X.H.G.
0.5078.6Ptp.2453.1.S1_atCV284013hypothetical protein-2e-28At5g52240MSBP1 (membrane steroid binding protein 1)S.X.H.G.
0.4673.7Ptp.4943.1.S1_atCV249629hypothetical protein-2e-99At1g20090ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)S.X.H.G.
0.4673.7PtpAffx.6505.1.A1_s_atCV238517hypothetical protein-2e-36At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)S.X.H.G.
0.4471.9Ptp.4306.1.S1_atCV225469hypothetical protein-5e-78At5g53300UBC10 (ubiquitin-conjugating enzyme 10)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
3.794.7GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue series
2.590.9GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue series
2.490.4GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue series
1.785.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
1.785.5GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.684.5GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.684.5GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
1.583.5GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.583.5GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
1.482.3GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.7301628Ptp.6486.1.S1_s_atCV249938actin 1-0At1g49240ACT8 (ACTIN 8)C.G.S.X.
0.640894PtpAffx.1258.1.S1_s_atCV242350actin 1-5e-138At5g09810ACT7 (ACTIN 7)C.G.S.X.
0.280735PtpAffx.1258.6.A1_a_atCV272817--3e-101At5g09810ACT7 (ACTIN 7)C.G.S.X.
0.323e-112406Ptp.20.1.A1_atCV272697actin 3-1e-134At3g12110ACT11 (actin-11)C.G.S.X.
0.251e-96355PtpAffx.7.2.A1_s_atBP932087actin 4-7e-74At3g12110ACT11 (actin-11)C.G.S.X.
0.262e-76287Ptp.4648.1.S1_s_atBP924393actin 4-4e-80At5g09810ACT7 (ACTIN 7)C.G.S.X.
0.308e-76286PtpAffx.32871.1.A1_atCK096770actin 2-8e-89At5g09810ACT7 (ACTIN 7)C.G.S.X.
0.291e-68262PtpAffx.7617.1.S1_a_atCA826002actin 2-2e-79At5g09810ACT7 (ACTIN 7)C.G.S.X.
0.252e-67258Ptp.2451.1.A1_atBP936792actin 4 /// actin 5-2e-60At5g09810ACT7 (ACTIN 7)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.6601154Arabidopsis thalianaAt5g09810830841ACT7 (ACTIN 7)Member of Actin gene family.Mutants are defective in germination and root growth.---C.G.S.X.
0.540668Glycine maxGma.6406.1.S1_atCD394756--0At2g37620ACT1 (ACTIN 1)C.G.S.X.
0.560914Hordeum vulgareContig1391_atContig1391--0At5g09810ACT7 (ACTIN 7)C.G.S.X.
0.540793Oryza sativaOs03g0718100AB047313.1-Actin 10At3g12110ACT11 (actin-11)C.G.S.X.
0.520950Triticum aestivumTa.28253.1.S1_atBJ250223--0At5g09810ACT7 (ACTIN 7)C.G.S.X.
0.5401233Vitis vinifera1606368_s_atCF208516actin 1-0At5g09810ACT7 (ACTIN 7)C.G.S.X.
0.560866Zea maysZm.16513.9.A1_a_atCD444572--0At5g09810ACT7 (ACTIN 7)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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