Gene omics information

Query gene ID	PtpAffx.1257.1.S1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	83.9	PtpAffx.1257.1.S1_a_at	CF228330	hypothetical protein	-	3e-65	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.37010.2.A1_at	CV281749	hypothetical protein	-	5e-34	At1g72710	CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.249.859.A1_at	CV276451	-	-	4e-43	At5g03240	UBQ3 (POLYUBIQUITIN 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.223266.1.S1_at	pmrna41180	hypothetical protein	-	1e-95	At1g10240	FRS11 (FAR1-related sequence 11)	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.12253.1.A1_at	CV225881	hypothetical protein	-	3e+0	At4g32960	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	Ptp.8000.1.S1_at	DN484105	hypothetical protein	-	0	Atmg01190	-	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	96.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	3077	PtpAffx.1257.1.S1_x_at	CF228330	hypothetical protein	-	1e-73	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.58	0	961	PtpAffx.1257.2.A1_at	CV236343	hypothetical protein	-	6e-34	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.44	0	716	PtpAffx.1257.4.S1_a_at	CX180448	hypothetical protein	-	2e-30	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.44	0	716	PtpAffx.1257.4.S1_at	CX180448	hypothetical protein	-	2e-30	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	7e-76	286	Ptp.6846.1.S1_s_at	CF231293	hypothetical protein	-	7e-9	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	1e-3	46	PtpAffx.208361.1.S1_at	pmrna16628	hypothetical protein	-	9e-28	At3g06170	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-2	42	PtpAffx.157613.1.S1_at	CX656242	hypothetical protein	-	2e-8	At4g31010	RNA binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e-2	40	PtpAffx.125801.1.A1_at	BP930539	hypothetical protein	-	6e-6	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e-2	40	PtpAffx.125801.1.A1_s_at	BP930539	hypothetical protein	-	6e-6	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	3e-65	250	Arabidopsis thaliana	At1g16180	838187	TMS membrane family protein / tumour differentially expressed (TDE) family protein	F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.29	4e-31	137	Glycine max	GmaAffx.66328.1.S1_at	AW277770	-	-	3e-13	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.25	2e-24	113	Hordeum vulgare	Contig3707_s_at	Contig3707	-	-	1e-23	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.22	8e-18	93	Oryza sativa	Os02g0792900	AK068367.1	-	TMS membrane protein/tumour differentiallyexpressed protein family protein	1e-15	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	2e-20	101	Triticum aestivum	Ta.906.1.S1_at	CK195658	-	-	3e-22	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.56	1e-138	492	Vitis vinifera	1611216_at	CB912018	hypothetical protein LOC100262087	-	4e-126	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.17	3e-17	89	Zea mays	Zm.747.1.A1_at	CF627612	hypothetical protein LOC100191588	-	3e-22	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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