CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.125021.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.125021.1.S1_at CK103071 hypothetical protein - 4e-20 At2g40270 protein kinase family protein S.X. H.G.
0.55 82.2 Ptp.1329.1.S1_s_at CK093720 - - 2e-78 At1g64650 - S.X. H.G.
0.46 73.7 PtpAffx.212189.1.S1_s_at pmrna23892 hypothetical protein - 2e-5 At5g07070 CIPK2 (CBL-INTERACTING PROTEIN KINASE 2) S.X. H.G.
0.46 73.7 Ptp.2457.1.S1_s_at CV264623 s-adenosylmethionine synthetase 2 - 2e-165 At3g17390 MTO3 (METHIONINE OVER-ACCUMULATOR 3) S.X. H.G.
0.40 67.0 Ptp.4715.2.S1_s_at CV228991 hypothetical protein - 2e-9 At4g30160 VLN4 (ARABIDOPSIS THALIANA VILLIN 4) S.X. H.G.
0.33 57.5 PtpAffx.204785.1.S1_at pmrna9432 hypothetical protein - 8e-1 At5g07150 leucine-rich repeat family protein S.X. H.G.
0.27 47.1 Ptp.1683.1.S1_a_at CV256655 precursor of transferase serine hydroxymethyltransferase 3 - 1e-41 At5g26780 SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.9 99.3 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.9 98.4 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
6.4 97.7 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.0 96.6 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.7 96.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.60 0 850 Ptp.2656.1.S1_at CV256702 hypothetical protein - 7e-7 At2g40270 protein kinase family protein C.G. S.X.
0.50 1e-110 400 Ptp.6412.1.S1_at CF216322 hypothetical protein - 3e-1 At2g33990 iqd9 (IQ-domain 9) C.G. S.X.
0.19 1e-45 184 Ptp.1690.1.A1_at CK092969 hypothetical protein - 1e+0 At2g04031 - C.G. S.X.
0.09 2e-19 97 PtpAffx.106438.1.A1_at CV269655 hypothetical protein - 1e-20 At2g40270 protein kinase family protein C.G. S.X.
0.15 3e-18 93 PtpAffx.115638.1.S1_at AJ771554 - - 3e-11 At3g56050 protein kinase family protein C.G. S.X.
0.11 1e-17 91 PtpAffx.120780.1.A1_at CV265642 hypothetical protein - 6e-6 At2g40270 protein kinase family protein C.G. S.X.
0.02 7e-4 46 PtpAffx.208329.1.S1_at pmrna16559 hypothetical protein - 5e-83 At3g01300 protein kinase, putative C.G. S.X.
0.02 7e-4 46 PtpAffx.202479.1.S1_at pmrna4971 hypothetical protein - 1e-72 At2g32980 unknown protein C.G. S.X.
0.02 7e-4 46 PtpAffx.117698.1.S1_s_at BU879536 hypothetical protein - 1e-65 At2g32980 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 4e-20 99 Arabidopsis thaliana At2g40270 818619 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA - - - C.G. S.X.
0.28 4e-27 123 Glycine max GmaAffx.7254.1.A1_at AW397813 - - 5e-21 At3g56050 protein kinase family protein C.G. S.X.
0.06 4e-12 71 Hordeum vulgare Contig13188_at Contig13188 - - 1e-4 At5g58540 protein kinase family protein C.G. S.X.
0.05 1e-12 75 Oryza sativa Os01g0206800 AY332472.1 - Protein kinase domain containing protein 1e-3 At5g45840 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.02 5e-1 36 Triticum aestivum TaAffx.30797.2.S1_s_at CA623819 - - 1e-3 At5g24610 unknown protein C.G. S.X.
0.13 6e-38 157 Vitis vinifera 1610359_at CB971752 hypothetical protein LOC100265601 - 8e-31 At3g56050 protein kinase family protein C.G. S.X.
0.02 9e-1 34 Zea mays Zm.9588.1.A1_at BM333293 - - 3e-1 At1g65620 AS2 (ASYMMETRIC LEAVES 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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