Gene omics information

Query gene ID PtpAffx.124498.1.S1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6891.3PtpAffx.124498.1.S1_atDN499848--2e-5At1g55890pentatricopeptide (PPR) repeat-containing proteinS.X.H.G.
0.5683.9PtpAffx.213992.1.S1_atpmrna27260hypothetical protein-1e-23At5g15550transducin family protein / WD-40 repeat family proteinS.X.H.G.
0.5683.9PtpAffx.156493.1.S1_s_atCN519416hypothetical protein-1e-3At4g32400SHS1 (SODIUM HYPERSENSITIVE 1)S.X.H.G.
0.5683.9PtpAffx.143974.1.S1_s_atBU832117hypothetical protein-3e-8At5g15550transducin family protein / WD-40 repeat family proteinS.X.H.G.
0.5279.4PtpAffx.104250.1.S1_atCF231050hypothetical protein-2e-40At1g24510T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putativeS.X.H.G.
0.5178.9PtpAffx.159874.1.A1_s_atCV256704hypothetical protein-3e-48At3g07770ATP bindingS.X.H.G.
0.4167.7PtpAffx.152014.1.S1_atCF235813--6e-3At1g18850unknown proteinS.X.H.G.
0.4167.7PtpAffx.80837.1.S1_atBU820308hypothetical protein-2e+0At5g65480unknown proteinS.X.H.G.
0.4167.7PtpAffx.144362.1.S1_atBU813785hypothetical protein-4e+0At1g50060pathogenesis-related protein, putativeS.X.H.G.
0.3964.6PtpAffx.137461.1.S1_atCX171679hypothetical protein-5e-22At5g27120SAR DNA-binding protein, putativeS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
12.799.3GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplar
11.299.1GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
8.398.5GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
4.996.5GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
4.896.4GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
4.896.4GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
3.995.1GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
3.995.1GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
3.494.0GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
3.193.2GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.580793PtpAffx.209744.1.S1_atpmrna19232hypothetical protein-4e-2At1g55890pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.395e-109395PtpAffx.4147.1.S1_atDN486419hypothetical protein-3e-3At3g13160pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.023e-550PtpAffx.213433.1.S1_atpmrna26266hypothetical protein-2e-11At2g41080pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.041e-448Ptp.700.1.A1_atCV261329hypothetical protein-2e-3At1g55890pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.012e-344PtpAffx.201632.1.S1_atpmrna3232--2e-12At1g19720pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.028e-342PtpAffx.224325.1.S1_atpmrna42774hypothetical protein-4e-8At1g07740pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.023e-240PtpAffx.206192.1.S1_atpmrna12293hypothetical protein-1e-2At3g28640pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.023e-240PtpAffx.204820.1.S1_s_atpmrna9505hypothetical protein-3e-4At1g13410-C.G.S.X.
0.023e-240PtpAffx.204820.1.S1_atpmrna9505hypothetical protein-3e-4At1g13410-C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.062e-550Arabidopsis thalianaAt1g55890842039pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:mitochondrion;POMFBA---C.G.S.X.
0.032e+034Glycine maxGmaAffx.36938.1.S1_atBM085386WRKY5 protein-2e-20At2g38470WRKY33C.G.S.X.
0.037e-134Hordeum vulgarerbaal1l19_s_atrbaal1l19--9e+0At5g47670NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)C.G.S.X.
0.033e-344Oryza sativaOs01g0392600AK067469.1-Hypothetical protein9e+0At5g60130transcriptional factor B3 family proteinC.G.S.X.
0.031e+034Triticum aestivumTaAffx.55846.1.S1_atCA660442--4e-3At3g42310unknown proteinC.G.S.X.
0.076e-340Vitis vinifera1613779_s_atCF603857--2e-2At1g76980-C.G.S.X.
0.034e-238Zea maysZm.6447.2.A1_atCO522715--2e+0At5g43460lesion inducing protein-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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