Gene omics information

Query gene ID	PtpAffx.124431.1.A1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	94.1	PtpAffx.124431.1.A1_at	CV264645	-	-	2e+0	At5g35510	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.86	97.4	PtpAffx.216790.1.S1_s_at	pmrna31796	hypothetical protein	-	9e-1	At5g47470	nodulin MtN21 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.76	94.3	Ptp.7099.1.S1_s_at	BU810141	hypothetical protein	-	4e+0	At5g40430	MYB22 (myb domain protein 22)	S.X.	H.G.	Please selecteFP Browser (expression)
0.70	91.7	PtpAffx.77880.2.A1_s_at	CV264314	hypothetical protein	-	7e+0	At5g46874	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.62	87.2	PtpAffx.64701.1.S1_x_at	CV236236	histone 2	-	3e-45	At2g38810	HTA8 (HISTONE H2A 8)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.221038.1.S1_at	pmrna37583	hypothetical protein	-	3e-3	At3g60670	zinc-binding protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	Ptp.6672.1.S1_s_at	CV247223	histone 2 /// histone 2	-	2e-62	At3g54560	HTA11	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.64701.2.S1_at	CX184746	histone 2	-	6e-12	At3g54560	HTA11	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.202524.1.S1_s_at	pmrna5051	hypothetical protein	-	6e-1	At1g13700	glucosamine/galactosamine-6-phosphate isomerase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.16047.1.S1_at	DN491783	-	-	4e+0	At5g14750	ATMYB66 (MYB DOMAIN PROTEIN 66)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
49.0	100.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.6	94.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	PtpAffx.219810.1.S1_s_at	pmrna35924	hypothetical protein	-	5e-2	At5g51670	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.219810.1.S1_at	pmrna35924	hypothetical protein	-	5e-2	At5g51670	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.215302.1.S1_at	pmrna29405	hypothetical protein	-	9e-2	At5g63930	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.204825.1.S1_at	pmrna9518	hypothetical protein	-	9e-46	At3g52140	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.204825.1.S1_x_at	pmrna9518	hypothetical protein	-	9e-46	At3g52140	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.204825.1.S1_s_at	pmrna9518	hypothetical protein	-	9e-46	At3g52140	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.200874.1.S1_at	pmrna1714	hypothetical protein	-	1e-57	At3g52140	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.200874.1.S1_s_at	pmrna1714	hypothetical protein	-	1e-57	At3g52140	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	Ptp.1561.1.S1_at	CK109422	-	-	8e-2	At2g04390	40S ribosomal protein S17 (RPS17A)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	34	Arabidopsis thaliana	At5g35510	833515	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	GmaAffx.49402.1.S1_at	BF067089	-	-	8e-1	At3g26360	unknown protein	C.G.	S.X.	Please select
0.03	8e-1	34	Hordeum vulgare	Contig11963_s_at	Contig11963	-	-	1e+0	At2g39080	binding / catalytic	C.G.	S.X.	Please select
0.04	3e+0	34	Oryza sativa	OsAffx.16834.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Triticum aestivum	TaAffx.6866.1.S1_s_at	CA674926	-	-	2e+0	At1g02840	SR1	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1621368_at	CB343128	hypothetical protein LOC100247376	-	7e-2	At1g69295	PDCB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4)	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	ZmAffx.192.1.A1_at	AI668442	-	-	2e-1	At1g51930	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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