CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.124389.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 86.0 PtpAffx.124389.1.S1_at BU809679 hypothetical protein - 7e-68 At1g43710 emb1075 (embryo defective 1075) S.X. H.G.
0.44 71.9 Ptp.6522.1.S1_at BU834949 hypothetical protein - 5e-22 At3g46450 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein S.X. H.G.
0.36 61.6 PtpAffx.202375.1.S1_at pmrna4770 hypothetical protein - 2e-30 At4g02030 - S.X. H.G.
0.32 55.2 PtpAffx.152437.4.S1_s_at BU824470 hypothetical protein - 4e-44 At3g59920 ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2) S.X. H.G.
0.27 47.1 PtpAffx.74657.1.S1_s_at CN520971 hypothetical protein - 3e-45 At3g42050 vacuolar ATP synthase subunit H family protein S.X. H.G.
0.21 36.5 PtpAffx.211143.1.S1_s_at pmrna21896 hypothetical protein - 1e-13 At5g35980 protein kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.4 95.9 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-2 40 PtpAffx.211434.1.S1_at pmrna22401 hypothetical protein - 7e-2 At4g26130 unknown protein C.G. S.X.
0.01 2e-1 38 PtpAffx.163275.1.A1_at CV239659 hypothetical protein - 1e-21 At1g20200 EMB2719 (EMBRYO DEFECTIVE 2719) C.G. S.X.
0.02 7e-1 36 PtpAffx.206092.1.S1_at pmrna12071 f-box family protein - 2e+0 At4g19360 unknown protein C.G. S.X.
0.02 7e-1 36 PtpAffx.201118.1.S1_at pmrna2202 hypothetical protein - 3e-8 At5g09430 hydrolase C.G. S.X.
0.02 7e-1 36 PtpAffx.19120.1.A1_at CV260849 hypothetical protein - 4e-5 At5g11640 - C.G. S.X.
0.01 3e+0 34 PtpAffx.358.1.S1_at CV239249 - - 2e-26 At3g52370 FLA15 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR) C.G. S.X.
0.01 3e+0 34 PtpAffx.210577.1.S1_at pmrna20746 hypothetical protein - 4e-32 At3g48195 phox (PX) domain-containing protein C.G. S.X.
0.01 3e+0 34 PtpAffx.205932.1.S1_at pmrna11773 hypothetical protein - 5e-2 At1g12150 - C.G. S.X.
0.01 3e+0 34 PtpAffx.201083.1.S1_at pmrna2140 - - 4e-136 At4g13930 SHM4 (serine hydroxymethyltransferase 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 7e-68 258 Arabidopsis thaliana At1g43710 840958 emb1075 (embryo defective 1075) F:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity;P:embryonic development ending in seed dormancy, amino acid metabolic process;C:cellular_component unknown;BMOFAPV - - - C.G. S.X.
0.22 2e-32 141 Glycine max Gma.3643.1.S1_at CA936445 - - 2e-50 At1g43710 emb1075 (embryo defective 1075) C.G. S.X.
0.02 4e+0 32 Hordeum vulgare EBpi07_SQ001_E20_at EBpi07_SQ001_E20 - - 5e-1 At1g64750 ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) C.G. S.X.
0.04 3e-1 38 Oryza sativa Os.46740.1.A1_at - - - 0 C.G. S.X.
0.03 8e+0 32 Triticum aestivum TaAffx.22736.1.S1_at CA745781 - - 7e+0 At3g13960 AtGRF5 (GROWTH-REGULATING FACTOR 5) C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1620292_at CA817018 hypothetical protein LOC100264686 - 3e-1 At2g45434 unknown protein C.G. S.X.
0.02 4e+0 32 Zea mays ZmAffx.601.1.S1_at AI715029 - - 8e-1 At1g35430 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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