Gene omics information

Query gene ID PtpAffx.124319.1.S1_a_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5784.2PtpAffx.124319.1.S1_a_atCV256648hypothetical protein-2e-19At5g24810ABC1 family proteinS.X.H.G.
0.4471.9PtpAffx.215338.1.S1_s_atpmrna29464hypothetical protein-8e-15At2g45320unknown proteinS.X.H.G.
0.4268.6PtpAffx.203143.1.S1_atpmrna6228hypothetical protein-1e-56At1g17760CSTF77S.X.H.G.
0.3153.7PtpAffx.89237.1.A1_atCV232343hypothetical protein-3e-11At1g21710OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1)S.X.H.G.
0.3052.0PtpAffx.200725.1.S1_s_atpmrna1394hypothetical protein-4e-20At1g50510indigoidine synthase A family proteinS.X.H.G.
0.2747.1PtpAffx.35473.1.S1_a_atCV244186hypothetical protein-3e-1At3g23280zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family proteinS.X.H.G.
0.2645.2PtpAffx.104237.1.A1_atCV254710--4e-8At1g72990BGAL17 (beta-galactosidase 17)S.X.H.G.
0.2136.5PtpAffx.208361.1.S1_atpmrna16628hypothetical protein-9e-28At3g06170TMS membrane family protein / tumour differentially expressed (TDE) family proteinS.X.H.G.
0.1525.3PtpAffx.6289.1.A1_a_atCV267715--1e-4At1g74440unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.897.4GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.597.1GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.796.3GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.995.1GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.992.5GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.389.8GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.389.8GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue series
2.389.8GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.389.8GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue series
2.289.3GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.650852PtpAffx.124319.2.S1_atCV228998hypothetical protein-2e+0At3g60540sec61beta family proteinC.G.S.X.
0.380837PtpAffx.225277.1.S1_atpmrna44507hypothetical protein-1e-44At5g24810ABC1 family proteinC.G.S.X.
0.094e-58226PtpAffx.225373.1.S1_atpmrna44682hypothetical protein-1e-33At5g24810ABC1 family proteinC.G.S.X.
0.234e-46186PtpAffx.124319.3.S1_atCK095241--2e+0At1g01070nodulin MtN21 family proteinC.G.S.X.
0.022e-138PtpAffx.209905.1.S1_atpmrna19520hypothetical protein-3e-3At1g29100copper-binding family proteinC.G.S.X.
0.012e-138PtpAffx.209405.1.S1_atpmrna18629hypothetical protein-8e-48At2g28320pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing proteinC.G.S.X.
0.022e-138PtpAffx.200068.1.S1_atpmrna125hypothetical protein-4e-1Atmg00140-C.G.S.X.
0.019e-136PtpAffx.224392.1.S1_atpmrna42880tir-nbs-lrr resistance protein-4e-5At4g09430disease resistance protein (TIR-NBS-LRR class), putativeC.G.S.X.
0.019e-136PtpAffx.222792.1.S1_atpmrna40450tir-nbs-lrr resistance protein-8e-3At4g09430disease resistance protein (TIR-NBS-LRR class), putativeC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.102e-1997Arabidopsis thalianaAt5g24810832550ABC1 family proteinF:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;BOMFPAV---C.G.S.X.
0.248e-29129Glycine maxGmaAffx.36023.1.S1_atBG725255--2e-4At5g24810ABC1 family proteinC.G.S.X.
0.031e+034Hordeum vulgareContig6076_atContig6076--1e-2At4g27470zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.025e+034Oryza sativaOs05g05177009633.m04118--2e-1At1g68200zinc finger (CCCH-type) family proteinC.G.S.X.
0.022e-138Triticum aestivumTaAffx.59002.1.S1_atCA610163--3e+0At1g50350-C.G.S.X.
0.072e-756Vitis vinifera1614413_atCF211310hypothetical protein LOC100242392-9e-9At5g24810ABC1 family proteinC.G.S.X.
0.024e+032Zea maysZmAffx.1022.1.S1_atAI881590--3e+0At5g46800BOU (A BOUT DE SOUFFLE)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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