Gene omics information

Query gene ID	PtpAffx.12253.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	83.9	PtpAffx.12253.1.A1_at	CV225881	hypothetical protein	-	3e+0	At4g32960	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.25116.1.A1_at	CV228813	hypothetical protein	-	2e-8	At3g54130	josephin family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.67146.1.S1_s_at	BI120910	hypothetical protein	-	1e-30	At1g07510	ftsh10 (FtsH protease 10)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.7787.1.S1_s_at	DN499212	-	-	4e+0	At2g05642	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.663.1.S1_x_at	AY302065.1	hypothetical protein	-	1e-90	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	Ptp.5593.1.S1_at	DN495608	hypothetical protein	-	7e-15	At4g26240	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.7	96.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	0	642	PtpAffx.12253.2.S1_at	CK099792	-	-	3e-2	At4g35510	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.112420.1.S1_at	CN520981	hypothetical protein	-	5e-62	At2g28000	CPN60A (CHAPERONIN-60ALPHA)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	36	PtpAffx.87981.1.S1_s_at	CN522616	hypothetical protein	-	1e+0	At5g23760	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	36	PtpAffx.87981.1.S1_at	CN522616	hypothetical protein	-	1e+0	At5g23760	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	36	PtpAffx.221674.1.S1_s_at	pmrna38677	hypothetical protein	-	2e-2	At1g30570	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.212893.1.S1_at	pmrna25236	chromatin remodeling complex subunit	-	3e-3	At2g47620	ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.210535.1.S1_at	pmrna20652	hypothetical protein	-	6e-24	At1g74800	galactosyltransferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.210535.1.S1_x_at	pmrna20652	hypothetical protein	-	6e-24	At1g74800	galactosyltransferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.210535.1.S1_s_at	pmrna20652	hypothetical protein	-	6e-24	At1g74800	galactosyltransferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At4g32960	829433	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	1e-9	65	Glycine max	Gma.3971.1.S1_at	BI971157	-	-	5e-3	At4g35510	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Hordeum vulgare	HVSMEk0017J06r2_at	HVSMEk0017J06r2	-	-	5e+0	At5g48590	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	34	Oryza sativa	Os08g0564200	9636.m04592	-	-	3e+0	At5g03370	acylphosphatase family	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e-2	40	Triticum aestivum	Ta.7364.1.A1_at	BJ309219	-	-	6e+0	At4g22110	alcohol dehydrogenase, putative	C.G.	S.X.	Please select
0.06	4e-12	71	Vitis vinifera	1609843_at	CB981161	hypothetical protein LOC100242269	-	2e+0	At5g54790	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	Zea mays	Zm.16088.1.A1_at	CF046660	lysM receptor-like kinase	-	2e-6	At4g11480	protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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