CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.12184.1.S1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 80.5 PtpAffx.12184.1.S1_a_at CN524707 hypothetical protein - 1e-14 At3g17609 HYH (HY5-HOMOLOG) S.X. H.G.
0.67 91.1 PtpAffx.6696.4.S1_at CV283797 hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein - 4e+0 At5g64040 PSAN S.X. H.G.
0.50 78.6 PtpAffx.37920.2.A1_at CV284037 thioredoxin m - 3e-2 At3g56420 - S.X. H.G.
0.50 78.6 PtpAffx.225140.1.S1_s_at pmrna44273 ammonium transporter /// ammonium transporter - 5e-5 At2g38290 ATAMT2 (AMMONIUM TRANSPORTER 2) S.X. H.G.
0.36 61.6 PtpAffx.208409.1.S1_at pmrna16713 hypothetical protein - 9e-4 At1g69870 proton-dependent oligopeptide transport (POT) family protein S.X. H.G.
0.16 26.9 Ptp.6221.2.A1_at CV259945 hypothetical protein - 1e-25 At5g03880 electron carrier S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.5 99.9 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
13.9 99.4 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
10.7 99.1 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.8 97.4 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.1 95.5 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1 93.2 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8 92.1 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.86 0 1193 PtpAffx.12184.1.S1_at CN524707 hypothetical protein - 1e-14 At3g17609 HYH (HY5-HOMOLOG) C.G. S.X.
0.26 2e-42 174 PtpAffx.12184.2.S1_at CX657795 hypothetical protein - 1e+0 At3g52590 UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) C.G. S.X.
0.02 1e-2 42 PtpAffx.118559.1.S1_at CK095185 - - 5e+0 At5g61090 nucleic acid binding C.G. S.X.
0.02 6e-2 40 PtpAffx.206821.1.S1_at pmrna13538 hypothetical protein - 1e-5 At5g11030 ALF4 (ABERRANT LATERAL ROOT FORMATION 4) C.G. S.X.
0.01 2e-1 38 PtpAffx.99816.1.A1_at DN487802 hypothetical protein - 6e-1 At1g76070 unknown protein C.G. S.X.
0.02 2e-1 38 PtpAffx.97321.1.A1_at CK090467 hypothetical protein - 9e-1 At1g76065 - C.G. S.X.
0.02 2e-1 38 PtpAffx.69958.1.A1_at CV237412 - - 2e-3 At2g29125 RTFL2 (ROTUNDIFOLIA LIKE 2) C.G. S.X.
0.01 2e-1 38 PtpAffx.4440.1.S1_at CV238113 - - 8e-7 At5g32440 - C.G. S.X.
0.02 2e-1 38 PtpAffx.26476.1.A1_s_at CV255282 hypothetical protein - 2e+0 At2g22080 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-14 81 Arabidopsis thaliana At3g17609 821027 HYH (HY5-HOMOLOG) F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO - - - C.G. S.X.
0.06 1e-2 42 Glycine max GmaAffx.38788.1.S1_at AW132322 bZIP transcription factor bZIP69 - 4e+0 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig26118_s_at Contig26118 - - 1e+0 At5g36280 - C.G. S.X.
0.03 1e-3 46 Oryza sativa Os11g0141400 AK070778.1 - Calcium-binding EF-hand domain containing protein 2e-3 At5g62500 ATEB1B (END BINDING PROTEIN 1B) C.G. S.X.
0.02 1e-2 42 Triticum aestivum Ta.26941.1.S1_at CD491257 - - 3e-11 At3g17820 ATGSKB6 C.G. S.X.
0.02 3e-3 42 Vitis vinifera 1621823_at CF214240 hypothetical protein LOC100253216 - 4e+0 At5g66000 unknown protein C.G. S.X.
0.02 2e-2 40 Zea mays ZmAffx.326.1.A1_at AI670508 - - 8e-1 At2g26860 F-box family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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