CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.121653.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 86.0 PtpAffx.121653.1.A1_at CV231587 hypothetical protein - 7e-5 At2g16405 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.50 78.6 PtpAffx.63094.1.A1_at CV254722 - - 3e+0 At2g23010 serine carboxypeptidase S10 family protein S.X. H.G.
0.44 71.9 PtpAffx.208317.1.S1_at pmrna16538 hypothetical protein - 5e-8 At1g24160 unknown protein S.X. H.G.
0.31 53.7 PtpAffx.121381.1.A1_at CV283436 - - 5e-10 At1g70150 zinc ion binding S.X. H.G.
0.23 40.5 PtpAffx.128173.1.A1_at CV228436 hypothetical protein - 6e-1 At2g24810 pathogenesis-related thaumatin family protein S.X. H.G.
0.21 36.5 PtpAffx.218531.1.S1_at pmrna34185 hypothetical protein - 1e-33 At5g67320 HOS15 (high expression of osmotically responsive genes 15) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.9 99.7 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.6 97.2 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.8 96.4 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7 91.8 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7 91.8 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5 90.9 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.53 7e-92 337 PtpAffx.18853.1.A1_at CV231158 hypothetical protein - 1e+0 At2g16405 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.23 5e-25 115 PtpAffx.249.423.A1_at CV279294 - - 2e-2 At2g16405 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.04 9e-2 38 PtpAffx.204732.1.S1_at pmrna9318 hypothetical protein - 3e+0 At3g16555 F-box family protein C.G. S.X.
0.05 9e-2 38 PtpAffx.145218.1.A1_at BP936462 hypothetical protein - 2e-3 At5g01330 PDC3 (pyruvate decarboxylase-3) C.G. S.X.
0.04 3e-1 36 PtpAffx.214096.1.S1_x_at pmrna27442 hypothetical protein - 8e-1 At4g28290 unknown protein C.G. S.X.
0.02 3e-1 36 PtpAffx.213361.1.S1_at pmrna26146 hypothetical protein - 8e-1 At3g54020 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
0.01 3e-1 36 PtpAffx.213000.1.S1_at pmrna25422 hypothetical protein - 2e-54 At4g19900 glycosyl transferase-related C.G. S.X.
0.03 1e+0 34 PtpAffx.9248.1.S1_at CK091052 hypothetical protein - 4e-4 At3g03980 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.03 1e+0 34 PtpAffx.79594.1.S1_s_at CK098523 hypothetical protein - 2e-20 At5g51970 sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 7e-5 48 Arabidopsis thaliana At2g16405 816138 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFBOPA - - - C.G. S.X.
0.12 6e-3 42 Glycine max GmaAffx.28050.1.S1_at BG652837 - - 1e-12 At2g16405 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig2024_at Contig2024 - - 4e+0 At5g43520 DC1 domain-containing protein C.G. S.X.
0.04 2e+0 34 Oryza sativa Os04g0171400 9637.m01935 - - 8e-1 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.04 7e-2 38 Triticum aestivum TaAffx.96690.1.S1_at CA689091 - - 2e-1 At1g19380 unknown protein C.G. S.X.
0.12 1e-6 52 Vitis vinifera 1619234_a_at CD802480 hypothetical protein LOC100258922 - 2e-27 At2g16405 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.03 4e-1 34 Zea mays Zm.17794.1.S1_at CK371286 hypothetical protein LOC100274149 - 6e-6 At4g18230 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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