CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.121458.1.A1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 87.0 PtpAffx.121458.1.A1_s_at CV239175 hypothetical protein - 3e-14 At3g20650 mRNA capping enzyme family protein S.X. H.G.
0.67 91.1 PtpAffx.223266.1.S1_at pmrna41180 hypothetical protein - 1e-95 At1g10240 FRS11 (FAR1-related sequence 11) S.X. H.G.
0.50 78.6 PtpAffx.22299.1.S1_at CN549751 f-box family protein - 6e-53 At3g54480 SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5) S.X. H.G.
0.38 63.7 PtpAffx.12239.1.A1_at CV258360 - - 2e+0 At4g22740 glycine-rich protein S.X. H.G.
0.29 50.5 Ptp.7493.1.S1_s_at CV266457 glutathione peroxidase - 2e-34 At4g11600 ATGPX6 (GLUTATHIONE PEROXIDASE 6) S.X. H.G.
0.27 47.1 PtpAffx.163577.1.S1_at BU835464 hypothetical protein - 1e-13 At2g41945 unknown protein S.X. H.G.
0.27 47.1 PtpAffx.72180.1.S1_s_at AI162185 hypothetical protein - 4e-13 At3g51040 RTH (RTE1-HOMOLOG) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.2 95.6 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8 86.4 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.98 0 1483 PtpAffx.121458.1.A1_at CV239175 hypothetical protein - 3e-14 At3g20650 mRNA capping enzyme family protein C.G. S.X.
0.63 0 1049 Ptp.5664.1.S1_at CV258879 hypothetical protein - 4e-30 At3g20650 mRNA capping enzyme family protein C.G. S.X.
0.02 1e-1 38 PtpAffx.9826.1.S1_at DN487836 sodium-dicarboxylate cotransporter - 7e+0 At4g23910 unknown protein C.G. S.X.
0.02 1e-1 38 PtpAffx.210934.1.S1_at pmrna21486 hypothetical protein - 1e-11 At1g54730 sugar transporter, putative C.G. S.X.
0.02 5e-1 36 PtpAffx.204723.1.S1_x_at pmrna9307 hypothetical protein - 2e-96 At1g49910 WD-40 repeat family protein / mitotic checkpoint protein, putative C.G. S.X.
0.02 5e-1 36 PtpAffx.204723.1.S1_at pmrna9307 hypothetical protein - 2e-96 At1g49910 WD-40 repeat family protein / mitotic checkpoint protein, putative C.G. S.X.
0.01 2e+0 34 PtpAffx.217359.1.S1_at pmrna32583 hypothetical protein - 3e-13 At1g62310 transcription factor jumonji (jmjC) domain-containing protein C.G. S.X.
0.04 2e+0 34 PtpAffx.20283.1.A1_at CK092137 - - 2e+0 At1g65352 - C.G. S.X.
0.02 2e+0 34 PtpAffx.102341.3.A1_x_at CV226155 hypothetical protein - 5e-22 At1g78880 balbiani ring 1-related / BR1-related C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 3e-14 79 Arabidopsis thaliana At3g20650 821612 mRNA capping enzyme family protein F:catalytic activity;P:mRNA capping;C:chloroplast;OVMFPB - - - C.G. S.X.
0.28 2e-31 137 Glycine max Gma.11177.1.S1_at BU084326 - - 3e-30 At3g20650 mRNA capping enzyme family protein C.G. S.X.
0.09 8e-10 63 Hordeum vulgare Contig8298_at Contig8298 - - 3e-18 At3g20650 mRNA capping enzyme family protein C.G. S.X.
0.09 3e-9 63 Oryza sativa Os08g0180000 AK103587.1 - contains InterPro domain(s): IPR004971 9e-19 At3g20650 mRNA capping enzyme family protein C.G. S.X.
0.07 3e-8 59 Triticum aestivum Ta.10112.1.S1_at CD884721 - - 4e-12 At3g20650 mRNA capping enzyme family protein C.G. S.X.
0.27 2e-24 111 Vitis vinifera 1612937_at BQ796823 hypothetical protein LOC100243615 - 8e-11 At3g20650 mRNA capping enzyme family protein C.G. S.X.
0.10 8e-16 83 Zea mays Zm.7544.1.A1_at BM334017 mRNA - 3e-2 At3g20650 mRNA capping enzyme family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage