Gene omics information

Query gene ID	PtpAffx.121254.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.121254.1.A1_at	CV249707	hypothetical protein	-	6e-21	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.7707.1.S1_s_at	DN498505	hypothetical protein	-	6e-20	At4g03965	protein binding / zinc ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.37856.1.A1_at	CV236110	hypothetical protein	-	8e-1	At5g39110	germin-like protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.2376.1.S1_at	CV241004	hypothetical protein	-	6e-11	At1g01300	aspartyl protease family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.17025.3.A1_at	CV268384	hypothetical protein	-	3e+0	At4g39330	CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.217218.1.S1_at	pmrna32394	hypothetical protein	-	9e-10	At1g58110	bZIP family transcription factor	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.0	98.9	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
8.9	98.7	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
8.4	98.6	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
7.1	98.1	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
6.5	97.8	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
5.3	96.9	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.52	0	712	Ptp.6946.1.S1_s_at	CV270134	hypothetical protein	-	1e-25	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.58	2e-163	575	PtpAffx.11646.1.S1_at	CV258006	hypothetical protein	-	2e-19	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	9e-55	214	PtpAffx.121254.2.A1_at	CV246727	hypothetical protein	-	2e-1	At4g02610	tryptophan synthase, alpha subunit, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	1e-13	77	PtpAffx.24472.1.A1_at	CV258387	hypothetical protein	-	9e-1	At5g03380	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-2	40	PtpAffx.58910.2.A1_a_at	CV258717	hypothetical protein	-	3e-5	At1g08770	PRA1.E (PRENYLATED RAB ACCEPTOR 1.E)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e-1	38	PtpAffx.207979.1.S1_at	pmrna15837	-	-	5e-15	At1g68930	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	36	PtpAffx.221980.1.S1_at	pmrna39137	hypothetical protein	-	5e-71	At3g51070	dehydration-responsive protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	36	PtpAffx.214487.1.S1_at	pmrna28174	autoinhibited H+ ATPase	-	3e-128	At3g42640	AHA8 (Arabidopsis H(+)-ATPase 8)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	36	PtpAffx.206500.1.S1_at	pmrna12893	autoinhibited H+ ATPase	-	5e-130	At3g42640	AHA8 (Arabidopsis H(+)-ATPase 8)	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	6e-21	101	Arabidopsis thaliana	At5g35620	833534	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	Cap-binding protein, binds to the 5' cap structure of nuclear-encoded mRNAs. Mutant is resistant to potyvirus infection.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.46	7e-34	145	Glycine max	GmaAffx.10709.1.S1_at	BE657216	-	-	4e-14	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select
0.30	1e-23	109	Hordeum vulgare	Contig5933_at	Contig5933	-	-	2e-6	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select
0.34	5e-17	89	Oryza sativa	Os10g0467600	U34598.1	-	Eukaryotic translation initiation factor 4E-2(eIF4E-2) (eIF-4E-2) (mRNA cap-binding protein)(eIF-(iso)4F 25 kDa subunit) (eIF-(iso)4F p28 subunit)	1e-11	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.27	7e-24	111	Triticum aestivum	Ta.1317.1.S1_at	M95818.1	initiation factor (iso)4F p28 subunit	-	7e-7	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select
0.40	5e-56	216	Vitis vinifera	1617268_at	CF205684.1	hypothetical protein LOC100259631	-	4e-13	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select
0.29	1e-17	89	Zea mays	Zm.6439.1.A1_at	AF076955.1	eucaryotic initiation factor7	-	3e-12	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage