CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.120762.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.120762.1.A1_at CV262910 hypothetical protein - 6e-3 At2g42975 unknown protein S.X. H.G.
0.80 96.0 PtpAffx.90356.2.A1_a_at CV271797 hypothetical protein - 2e-15 At1g62850 - S.X. H.G.
0.60 86.0 Ptp.1002.1.A1_at CV241951 hypothetical protein - 2e+0 At1g23730 BCA3 (BETA CARBONIC ANHYDRASE 4) S.X. H.G.
0.59 84.9 Ptp.5291.1.S1_at CN521303 - - 2e-3 At1g72030 GCN5-related N-acetyltransferase (GNAT) family protein S.X. H.G.
0.50 78.6 PtpAffx.79920.1.A1_at CK090376 hypothetical protein - 1e+0 At5g59845 gibberellin-regulated family protein S.X. H.G.
0.20 34.6 PtpAffx.151180.1.S1_at CX654538 one helix protein 2 - 4e-26 At1g34000 OHP2 (ONE-HELIX PROTEIN 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.7 99.6 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
14.0 99.4 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.8 98.4 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.3 97.7 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.7 96.3 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.1 95.5 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.6 94.5 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3 89.8 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 38 Ptp.7241.1.S1_s_at CV245804 - - 9e-12 At3g14100 oligouridylate-binding protein, putative C.G. S.X.
0.02 5e-1 36 PtpAffx.216874.1.S1_s_at pmrna31919 hypothetical protein - 6e-23 At1g59740 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
0.02 5e-1 36 PtpAffx.203189.1.S1_at pmrna6323 hypothetical protein - 2e+0 At3g45150 TCP16 (TCP domain protein 16) C.G. S.X.
0.02 5e-1 36 PtpAffx.203189.1.S1_s_at pmrna6323 hypothetical protein - 2e+0 At3g45150 TCP16 (TCP domain protein 16) C.G. S.X.
0.02 5e-1 36 Ptp.5963.1.S1_at CV229887 - - 4e-26 At2g35800 mitochondrial substrate carrier family protein C.G. S.X.
0.02 5e-1 36 Ptp.5963.1.S1_s_at CV229887 hypothetical protein - 4e-26 At2g35800 mitochondrial substrate carrier family protein C.G. S.X.
0.02 5e-1 36 Ptp.1875.2.S1_at CK092617 hypothetical protein - 1e-3 At2g26360 binding C.G. S.X.
0.03 2e+0 34 PtpAffx.213424.1.S1_at pmrna26250 hypothetical protein - 1e-1 At5g05360 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.210892.1.S1_at pmrna21400 hypothetical protein - 9e-2 At5g48670 AGL80 (AGAMOUS-LIKE 80) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 6e-3 42 Arabidopsis thaliana At2g42975 818899 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PMF - - - C.G. S.X.
0.27 3e-27 123 Glycine max Gma.12759.1.S1_at CD396841 - - 6e-9 At2g42975 unknown protein C.G. S.X.
0.04 8e-1 34 Hordeum vulgare HW05N09u_at HW05N09u - - 2e+0 At5g67620 unknown protein C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.17714.1.S1_at - - - 0 C.G. S.X.
0.03 4e-1 36 Triticum aestivum Ta.12368.2.S1_x_at CD862168 - - 2e+1 At4g17900 zinc-binding family protein C.G. S.X.
0.19 3e-42 171 Vitis vinifera 1608681_at CA817539 hypothetical protein LOC100243650 - 6e-19 At2g42975 unknown protein C.G. S.X.
0.03 3e+0 32 Zea mays Zm.4403.1.S1_at AY111276.1 hypothetical protein LOC100279045 - 5e+0 At5g16400 ATF2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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