Gene omics information

Query gene ID	PtpAffx.120315.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	96.0	PtpAffx.120315.1.S1_at	CX171118	hypothetical protein	-	5e-16	At3g30200	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.55477.1.S1_s_at	CX186924	hypothetical protein	-	3e-51	At3g24430	HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.381.3.A1_a_at	BP928153	-	-	3e+0	At2g26120	glycine-rich protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.126036.1.S1_at	BP926823	-	-	8e-1	At3g11020	DREB2B (DRE/CRT-BINDING PROTEIN 2B)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.22483.1.S1_s_at	DN499741	hypothetical protein	-	4e-38	At5g22800	EMB1030 (EMBRYO DEFECTIVE 1030)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.6213.1.S1_x_at	CV236541	precursor of transferase serine hydroxymethyltransferase 2	-	3e-110	At4g37930	SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	97.0	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.4	97.0	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.9	96.5	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.9	96.5	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.6	96.2	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.5	96.1	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.3	95.8	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.8	94.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.8	94.9	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.8	94.9	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	0	702	PtpAffx.204795.1.S1_at	pmrna9446	hypothetical protein	-	1e-17	At1g07110	F2KP (FRUCTOSE-2,6-BISPHOSPHATASE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	2e-31	137	Ptp.7078.1.S1_at	DN488158	hypothetical protein	-	1e-4	At3g30200	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	2e-31	137	Ptp.7078.1.S1_s_at	DN488158	hypothetical protein	-	1e-4	At3g30200	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-2	40	PtpAffx.224233.1.S1_s_at	pmrna42601	amino acid permease	-	8e-17	At5g09220	AAP2 (AMINO ACID PERMEASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	Ptp.5282.1.A1_s_at	CV276728	hypothetical protein	-	6e-84	At5g54770	THI1	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.309.1.S1_x_at	CV282611	ZIP transporter /// ZIP transporter	-	3e-12	At1g55910	ZIP11 (ZINC TRANSPORTER 11 PRECURSOR)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	PtpAffx.214018.1.S1_at	pmrna27301	hypothetical protein	-	4e-22	At2g06530	VPS2.1	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	5e-1	36	PtpAffx.134027.1.A1_at	CV252513	hypothetical protein	-	2e+0	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	Ptp.6041.1.S1_at	CV245556	hypothetical protein	-	5e-88	At2g06530	VPS2.1	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	5e-16	85	Arabidopsis thaliana	At3g30200	822713	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	3e-15	83	Glycine max	GmaAffx.56415.1.S1_at	CA783053	-	-	5e-6	At1g07110	F2KP (FRUCTOSE-2,6-BISPHOSPHATASE)	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	Contig3463_s_at	Contig3463	-	-	5e-30	At1g07110	F2KP (FRUCTOSE-2,6-BISPHOSPHATASE)	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	OsAffx.9626.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Triticum aestivum	TaAffx.107773.1.S1_at	CA695634	-	-	3e+0	At1g47495	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1613777_at	CF404767	-	-	1e+0	At3g04430	anac049 (Arabidopsis NAC domain containing protein 49)	C.G.	S.X.	Please select
0.03	2e-1	36	Zea mays	Zm.150.2.A1_at	CA452551	-	-	2e+0	At5g27020	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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