Gene omics information

Query gene ID PtpAffx.120315.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8096.0PtpAffx.120315.1.S1_atCX171118hypothetical protein-5e-16At3g30200-S.X.H.G.
0.8397.0PtpAffx.55477.1.S1_s_atCX186924hypothetical protein-3e-51At3g24430HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101)S.X.H.G.
0.6086.0PtpAffx.381.3.A1_a_atBP928153--3e+0At2g26120glycine-rich proteinS.X.H.G.
0.5078.6PtpAffx.126036.1.S1_atBP926823--8e-1At3g11020DREB2B (DRE/CRT-BINDING PROTEIN 2B)S.X.H.G.
0.5078.6PtpAffx.22483.1.S1_s_atDN499741hypothetical protein-4e-38At5g22800EMB1030 (EMBRYO DEFECTIVE 1030)S.X.H.G.
0.4067.0Ptp.6213.1.S1_x_atCV236541precursor of transferase serine hydroxymethyltransferase 2-3e-110At4g37930SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.497.0GSM372045Clone1979_LPI5_N+_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.497.0GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.996.5GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.996.5GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.696.2GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.596.1GSM372044Clone1979_LPI5_N+_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.395.8GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.894.9GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.894.9GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.894.9GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.470702PtpAffx.204795.1.S1_atpmrna9446hypothetical protein-1e-17At1g07110F2KP (FRUCTOSE-2,6-BISPHOSPHATASE)C.G.S.X.
0.142e-31137Ptp.7078.1.S1_atDN488158hypothetical protein-1e-4At3g30200-C.G.S.X.
0.142e-31137Ptp.7078.1.S1_s_atDN488158hypothetical protein-1e-4At3g30200-C.G.S.X.
0.014e-240PtpAffx.224233.1.S1_s_atpmrna42601amino acid permease-8e-17At5g09220AAP2 (AMINO ACID PERMEASE 2)C.G.S.X.
0.021e-138Ptp.5282.1.A1_s_atCV276728hypothetical protein-6e-84At5g54770THI1C.G.S.X.
0.025e-136PtpAffx.309.1.S1_x_atCV282611ZIP transporter /// ZIP transporter-3e-12At1g55910ZIP11 (ZINC TRANSPORTER 11 PRECURSOR)C.G.S.X.
0.035e-136PtpAffx.214018.1.S1_atpmrna27301hypothetical protein-4e-22At2g06530VPS2.1C.G.S.X.
0.045e-136PtpAffx.134027.1.A1_atCV252513hypothetical protein-2e+0At2g33040ATP synthase gamma chain, mitochondrial (ATPC)C.G.S.X.
0.025e-136Ptp.6041.1.S1_atCV245556hypothetical protein-5e-88At2g06530VPS2.1C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.095e-1685Arabidopsis thalianaAt3g30200822713-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P---C.G.S.X.
0.243e-1583Glycine maxGmaAffx.56415.1.S1_atCA783053--5e-6At1g07110F2KP (FRUCTOSE-2,6-BISPHOSPHATASE)C.G.S.X.
0.033e+032Hordeum vulgareContig3463_s_atContig3463--5e-30At1g07110F2KP (FRUCTOSE-2,6-BISPHOSPHATASE)C.G.S.X.
0.033e+034Oryza sativaOsAffx.9626.1.S1_at---0C.G.S.X.
0.032e+034Triticum aestivumTaAffx.107773.1.S1_atCA695634--3e+0At1g47495unknown proteinC.G.S.X.
0.035e-134Vitis vinifera1613777_atCF404767--1e+0At3g04430anac049 (Arabidopsis NAC domain containing protein 49)C.G.S.X.
0.032e-136Zea maysZm.150.2.A1_atCA452551--2e+0At5g27020unknown proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage