Gene omics information

Query gene ID	PtpAffx.119499.2.A1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	84.2	PtpAffx.119499.2.A1_s_at	BP930188	hypothetical protein	-	3e-52	At1g10950	endomembrane protein 70, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.6063.1.S1_at	CV231920	hypothetical protein	-	8e-9	At5g06660	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	Ptp.5458.1.S1_s_at	CV261214	hypothetical protein	-	2e+0	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.5430.1.S1_x_at	CF228221	hypothetical protein	-	1e-103	At1g19910	AVA-P2	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.89308.1.A1_at	CV229890	hypothetical protein	-	9e-5	At4g01040	glycosyl hydrolase family 18 protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.113217.1.S1_s_at	CN520202	hypothetical protein	-	1e-32	At2g25310	carbohydrate binding	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.3	93.7	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	0	692	PtpAffx.217211.1.S1_at	pmrna32385	hypothetical protein	-	9e-134	At1g10950	endomembrane protein 70, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.38	0	692	PtpAffx.217211.1.S1_s_at	pmrna32385	hypothetical protein	-	9e-134	At1g10950	endomembrane protein 70, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.27	1e-58	228	PtpAffx.52345.1.A1_at	CK087233	-	-	9e+0	At4g29670	thioredoxin family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-2	42	PtpAffx.128201.1.S1_at	CV227481	-	-	1e+0	At1g66475	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.59002.1.S1_s_at	CV233920	hypothetical protein	-	6e-53	At5g18170	GDH1 (GLUTAMATE DEHYDROGENASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.59002.1.S1_at	CV233920	hypothetical protein	-	6e-53	At5g18170	GDH1 (GLUTAMATE DEHYDROGENASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	38	PtpAffx.39580.1.S1_at	CV269083	hypothetical protein	-	1e-5	At1g10650	protein binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.00	8e-1	36	PtpAffx.209844.1.S1_a_at	pmrna19407	hypothetical protein	-	1e-111	At1g70320	UPL2 (UBIQUITIN-PROTEIN LIGASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	PtpAffx.159029.1.A1_s_at	CF231532	hypothetical protein	-	1e-38	At1g59520	CW7	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	3e-52	206	Arabidopsis thaliana	At1g10950	837638	endomembrane protein 70, putative	F:unknown;P:unknown;C:integral to membrane, Golgi apparatus, membrane;MPOFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.30	7e-69	262	Glycine max	GmaAffx.91590.1.S1_s_at	CF807315	-	-	1e-84	At1g10950	endomembrane protein 70, putative	C.G.	S.X.	Please select
0.23	8e-17	87	Hordeum vulgare	Contig13000_at	Contig13000	-	-	8e-58	At1g10950	endomembrane protein 70, putative	C.G.	S.X.	Please select
0.12	6e-27	123	Oryza sativa	Os11g0181100	AK100605.1	-	Nonaspanin (TM9SF) family protein	2e-70	At1g10950	endomembrane protein 70, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	5e-20	99	Triticum aestivum	Ta.10045.1.S1_a_at	CA604324	-	-	1e-52	At1g10950	endomembrane protein 70, putative	C.G.	S.X.	Please select
0.18	8e-56	216	Vitis vinifera	1619217_at	CF212944	-	-	8e-80	At1g10950	endomembrane protein 70, putative	C.G.	S.X.	Please select
0.14	9e-35	147	Zea mays	Zm.17849.1.S1_at	AY110409.1	hypothetical protein LOC100192672	-	1e-71	At1g10950	endomembrane protein 70, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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