Gene omics information

Query gene ID	PtpAffx.119354.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	82.2	PtpAffx.119354.1.A1_at	BP935809	hypothetical protein	-	1e-4	At4g25640	MATE efflux family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.141002.1.A1_at	CV237864	-	-	1e+0	At2g12557	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.121699.1.A1_at	CV230184	hypothetical protein	-	3e-17	At5g52960	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.37	62.3	Ptp.313.3.A1_s_at	CV249535	hypothetical protein	-	6e+0	At2g03320	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.679.1.S1_s_at	CV276694	peroxiredoxin	-	5e-41	At3g26060	ATPRX Q	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.679.1.S1_at	CV276694	peroxiredoxin	-	5e-41	At3g26060	ATPRX Q	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.5938.1.S1_at	BU837105	hypothetical protein	-	1e-20	At1g05190	emb2394 (embryo defective 2394)	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	Ptp.7199.1.S1_s_at	CX654989	hypothetical protein	-	2e-46	At3g13120	30S ribosomal protein S10, chloroplast, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.6001.1.S1_at	CV237297	hypothetical protein	-	3e-43	At2g28000	CPN60A (CHAPERONIN-60ALPHA)	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.18034.1.A1_at	CV257108	hypothetical protein	-	1e-8	At3g21200	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.3	99.2	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
10.0	98.9	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.3	98.5	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.4	97.7	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.7	97.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.6	97.2	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.4	97.0	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.2	95.6	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	3e-176	619	PtpAffx.213108.1.S1_at	pmrna25650	hypothetical protein	-	1e-24	At4g25640	MATE efflux family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.48	1e-134	480	PtpAffx.119354.2.A1_s_at	CV264820	hypothetical protein	-	3e-5	At4g25640	MATE efflux family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	2e-23	111	PtpAffx.98425.1.S1_at	BU875119	hypothetical protein	-	2e-5	At4g25640	MATE efflux family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	3e-9	63	PtpAffx.202223.1.S1_at	pmrna4451	hypothetical protein	-	1e-30	At4g00350	MATE efflux family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e-1	36	PtpAffx.216575.1.S1_at	pmrna31439	hypothetical protein	-	3e-1	At1g20875	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.225276.1.S1_at	pmrna44505	cc-nbs-lrr resistance protein	-	2e+0	At5g42790	PAF1	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.215648.1.S1_at	pmrna29945	hypothetical protein	-	3e-3	At4g22790	MATE efflux family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.206865.1.S1_at	pmrna13631	nbs-lrr resistance protein	-	4e-1	At5g25410	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.201632.1.S1_at	pmrna3232	-	-	2e-12	At1g19720	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	1e-4	48	Arabidopsis thaliana	At4g25640	828669	MATE efflux family protein	F:antiporter activity, drug transporter activity;P:multidrug transport;C:plasma membrane, membrane;BOPFAM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	3e-15	83	Glycine max	Gma.10447.1.S1_at	AW734913	-	-	3e-5	At4g00350	MATE efflux family protein	C.G.	S.X.	Please select
0.04	7e-5	48	Hordeum vulgare	Contig24145_at	Contig24145	-	-	1e-1	At1g33100	MATE efflux family protein	C.G.	S.X.	Please select
0.02	4e+0	34	Oryza sativa	Os09g0468000	AK103478.1	-	Multi antimicrobial extrusion protein MatE familyprotein	3e+0	At5g65380	ripening-responsive protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	2e-9	63	Triticum aestivum	Ta.24213.1.A1_at	BJ253133	-	-	5e-3	At1g11670	MATE efflux family protein	C.G.	S.X.	Please select
0.03	9e+0	30	Vitis vinifera	1619435_at	CF201436.1	-	-	5e+0	At1g62190	small conjugating protein ligase	C.G.	S.X.	Please select
0.03	6e-2	38	Zea mays	Zm.3571.1.S1_at	BG265645	Hypothetical protein LOC100193516	-	4e+0	At4g17030	ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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