Gene omics information

Query gene ID	PtpAffx.119343.2.A1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.97	99.9	PtpAffx.119343.2.A1_a_at	BP936124	hypothetical protein	-	4e-6	At4g29780	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.97	99.9	PtpAffx.215817.1.S1_at	pmrna30229	AP2/ERF domain-containing transcription factor	-	8e-7	At3g23240	ERF1 (ETHYLENE RESPONSE FACTOR 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.94	99.6	PtpAffx.204670.1.S1_at	pmrna9194	AP2/ERF domain-containing transcription factor	-	7e-9	At1g43160	RAP2.6 (related to AP2 6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.94	99.6	Ptp.8041.2.A1_s_at	DN488070	hypothetical protein	-	1e-6	At4g24570	mitochondrial substrate carrier family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.93	99.5	PtpAffx.8810.1.S1_at	CK096534	AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor	-	2e-34	At1g21910	AP2 domain-containing transcription factor family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.92	99.3	PtpAffx.158361.1.S1_at	CA822309	-	-	1e+0	At3g47510	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.91	99.2	PtpAffx.30602.1.A1_at	CV268363	hypothetical protein	-	1e-4	At5g17800	AtMYB56 (myb domain protein 56)	S.X.	H.G.	Please selecteFP Browser (expression)
0.89	97.8	PtpAffx.106356.1.S1_at	CX660277	AP2/ERF domain-containing transcription factor	-	5e+0	At3g15050	IQD10 (IQ-domain 10)	S.X.	H.G.	Please selecteFP Browser (expression)
0.88	97.7	PtpAffx.93687.1.S1_at	BP927882	AP2/ERF domain-containing transcription factor	-	1e+0	At1g71450	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.87	97.5	PtpAffx.8577.2.A1_at	CV256116	-	-	2e-31	At4g08950	EXO (EXORDIUM)	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
46.9	100.0	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
36.3	100.0	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.0	76.2	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.9	74.2	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.9	74.2	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
0.9	74.2	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.5	63.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
0.4	59.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
0.4	59.5	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.4	59.5	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.58	2e-135	482	PtpAffx.119343.1.A1_a_at	BP933189	hypothetical protein	-	4e-10	At5g12010	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.33	2e-39	163	PtpAffx.119343.4.A1_at	DN488965	-	-	3e+0	At3g52560	UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	1e-28	127	PtpAffx.206660.1.S1_at	pmrna13221	hypothetical protein	-	2e-23	At5g12010	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.25	2e-24	113	PtpAffx.29056.1.S1_at	DN500805	hypothetical protein	-	6e-6	At5g12010	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	6e-6	52	PtpAffx.73964.1.A1_at	DN488882	-	-	1e+0	At5g60800	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-2	40	PtpAffx.208090.1.S1_at	pmrna16068	hypothetical protein	-	7e-1	At4g00467	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e-1	36	PtpAffx.32899.1.A1_at	CK095938	-	-	1e-1	At5g64520	XRCC2	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-1	36	Ptp.6245.1.A1_at	CV245443	hypothetical protein	-	3e-8	At5g18850	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.32901.1.A1_s_at	CV230978	hypothetical protein	-	2e-9	At3g17470	RelA/SpoT domain-containing protein / calcium-binding EF-hand family protein	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	4e-6	52	Arabidopsis thaliana	At4g29780	829100	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;MPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.27	2e-21	103	Glycine max	GmaAffx.72063.1.S1_at	AW102068	-	-	7e-5	At4g29780	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	36	Hordeum vulgare	EBro08_SQ008_H06_at	EBro08_SQ008_H06	-	-	9e-1	At3g47836	unknown protein	C.G.	S.X.	Please select
0.03	1e-4	48	Oryza sativa	Os01g0582600	9629.m03821	-	Conserved hypothetical protein	7e-5	At4g29780	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-6	52	Triticum aestivum	Ta.10520.1.S1_at	AL828817	-	-	2e-2	At4g29780	unknown protein	C.G.	S.X.	Please select
0.24	2e-27	121	Vitis vinifera	1619478_at	CD004753	hypothetical protein LOC100247440	-	3e-9	At5g12010	unknown protein	C.G.	S.X.	Please select
0.04	3e-2	38	Zea mays	Zm.2671.1.S1_at	AW066803	-	-	3e+0	At1g26150	PERK10 (PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 10)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage