Gene omics information

Query gene ID	PtpAffx.119247.1.A1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	84.2	PtpAffx.119247.1.A1_at	DN486218	-	-	4e+0	At5g50665	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.211622.1.S1_at	pmrna22777	-	-	9e-6	At1g35580	CINV1 (cytosolic invertase 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.218251.1.S1_at	pmrna33803	hypothetical protein	-	2e+1	At4g05050	UBQ11 (UBIQUITIN 11)	S.X.	H.G.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.219999.1.S1_at	pmrna36231	hypothetical protein	-	9e-6	At5g18170	GDH1 (GLUTAMATE DEHYDROGENASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.206455.1.S1_at	pmrna12806	hypothetical protein	-	4e-2	At1g56300	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.108322.1.A1_at	CV245001	-	-	9e-1	At5g49330	AtMYB111 (myb domain protein 111)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.8	99.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
19.7	99.7	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.7	97.3	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.1	96.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	2e-2	40	PtpAffx.17967.1.A1_at	CV266301	-	-	6e+0	At5g61420	MYB28 (myb domain protein 28)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-1	36	PtpAffx.86475.1.S1_at	DN493076	-	-	2e+0	At3g62390	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	36	PtpAffx.218401.1.S1_at	pmrna34001	hypothetical protein	-	8e-105	At1g08730	XIC	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.100742.1.S1_at	CV242765	-	-	4e-1	At4g10270	wound-responsive family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e+0	32	PtpAffx.82571.1.A1_at	CV241604	-	-	3e+0	At3g16480	MPPalpha (mitochondrial processing peptidase alpha subunit)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e+0	32	PtpAffx.80348.1.A1_at	DN491427	hypothetical protein	-	1e+0	At3g55250	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e+0	32	PtpAffx.67424.2.A1_at	CV244827	hypothetical protein	-	2e+0	At3g14140	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e+0	32	PtpAffx.66020.1.S1_at	DN486303	-	-	7e+0	At5g08460	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e+0	32	PtpAffx.60219.1.S1_at	CK097835	hypothetical protein	-	7e-1	At3g58300	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At5g50665	835137	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	HgAffx.20023.1.S1_at	CB378004	-	-	1e+0	At5g41960	unknown protein	C.G.	S.X.	Please select
0.06	5e-1	34	Hordeum vulgare	EBed01_SQ003_C19_at	EBed01_SQ003_C19	-	-	9e+0	At5g23480	DNA binding	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os01g0365201	NM_194035.1	-	-	4e+0	At1g49140	NADH-ubiquinone oxidoreductase-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Triticum aestivum	TaAffx.39388.1.A1_at	BG907623	-	-	8e-1	At4g15830	binding	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1618952_at	CF405185	-	-	7e-1	At4g18890	brassinosteroid signalling positive regulator-related	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.18678.1.A1_a_at	CO522483	hypothetical protein LOC100193301	-	2e-8	At5g65510	AIL7 (AINTEGUMENTA-like 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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