CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.118999.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 PtpAffx.118999.1.S1_at DN497310 hypothetical protein - 5e+0 At1g43610 NLI interacting factor (NIF) family protein S.X. H.G.
0.20 34.6 PtpAffx.200668.1.S1_at pmrna1299 hypothetical protein - 1e+0 At4g00130 - S.X. H.G.
0.18 30.8 PtpAffx.116760.1.A1_at CK089500 - - 9e+0 At3g49920 VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) S.X. H.G.
0.09 14.6 Ptp.6448.2.S1_at CK093215 - - 8e-2 At5g22700 F-box family protein S.X. H.G.
0.04 6.9 PtpAffx.121370.1.A1_at CV242512 - - 1e+0 At5g42635 glycine-rich protein S.X. H.G.
0.02 3.6 PtpAffx.118936.1.S1_at BU811374 hypothetical protein - 3e+0 At3g46630 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.9 99.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.3 96.9 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.2 96.8 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.1 96.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 3e-11 69 Ptp.3642.1.A1_s_at CV245417 hypothetical protein - 2e-3 At5g20190 binding C.G. S.X.
0.08 3e-11 69 Ptp.3642.1.A1_at CV245417 hypothetical protein - 2e-3 At5g20190 binding C.G. S.X.
0.07 4e-4 46 PtpAffx.151636.1.A1_at DN487621 - - 4e+0 At5g41080 glycerophosphoryl diester phosphodiesterase family protein C.G. S.X.
0.05 1e-1 38 PtpAffx.215850.1.S1_x_at pmrna30268 hypothetical protein - 9e-2 At1g56085 - C.G. S.X.
0.05 1e-1 38 PtpAffx.215850.1.S1_at pmrna30268 hypothetical protein - 9e-2 At1g56085 - C.G. S.X.
0.01 4e-1 36 PtpAffx.224145.1.S1_at pmrna42404 hypothetical protein - 9e-1 At2g32560 F-box family protein C.G. S.X.
0.02 4e-1 36 PtpAffx.221689.1.S1_at pmrna38702 hypothetical protein - 2e+0 At3g42180 catalytic/ transferase, transferring glycosyl groups C.G. S.X.
0.02 2e+0 34 PtpAffx.22096.2.A1_at CN524015 hypothetical protein - 2e-15 At4g33410 signal peptide peptidase family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.22096.2.A1_a_at CN524015 hypothetical protein - 2e-15 At4g33410 signal peptide peptidase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e+0 32 Arabidopsis thaliana At1g43610 840945 NLI interacting factor (NIF) family protein F:phosphoprotein phosphatase activity;P:biological_process unknown;C:nucleus;MOFPV - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.71519.1.A1_at AW761262 - - 3e+0 At3g07410 AtRABA5b (Arabidopsis Rab GTPase homolog A5b) C.G. S.X.
0.03 9e+0 30 Hordeum vulgare Contig11592_x_at Contig11592 - - 1e+1 Atcg00800 - C.G. S.X.
0.04 9e+0 32 Oryza sativa OsAffx.1527.2.A1_at - - - 0 C.G. S.X.
0.04 5e+0 32 Triticum aestivum TaAffx.50683.1.S1_at CA736961 - - 3e+0 At5g06300 carboxy-lyase C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1616220_at CD718627 hypothetical protein LOC100243760 - 3e-1 At2g31040 ATP synthase protein I -related C.G. S.X.
0.04 8e+0 30 Zea mays ZmAffx.675.1.S1_at AI734494 - - 3e+0 At4g24700 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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