Gene omics information

Query gene ID	PtpAffx.118500.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	83.9	PtpAffx.118500.1.S1_at	CV130606	hypothetical protein	-	5e-16	At4g03390	SRF3 (STRUBBELIG-RECEPTOR FAMILY 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.31378.4.S1_a_at	CN518677	hypothetical protein	-	2e-2	At4g05440	EDA35 (embryo sac development arrest 35)	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.205956.1.S1_s_at	pmrna11823	hypothetical protein	-	2e-34	At4g22360	SWIB complex BAF60b domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.119533.1.S1_s_at	BP928963	hypothetical protein	-	2e-14	At1g24120	ARL1 (ARG1-LIKE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.70792.1.S1_s_at	CN524277	hypothetical protein	-	5e-75	At3g60190	ADL1E (ARABIDOPSIS DYNAMIN-LIKE 1E)	S.X.	H.G.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.213994.1.S1_at	pmrna27263	hypothetical protein	-	7e-35	At3g29390	RIK (RS2-Interacting KH protein)	S.X.	H.G.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.114326.1.A1_at	CV263388	-	-	2e+0	At5g10040	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.1670.1.S1_a_at	CV281748	hypothetical protein	-	2e+0	At1g66380	MYB114 (myb domain protein 114)	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	Ptp.4860.1.S1_s_at	AJ776507	hypothetical protein	-	1e-66	At1g74910	ADP-glucose pyrophosphorylase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.22429.2.A1_a_at	DN492140	hypothetical protein	-	5e-7	At5g57950	26S proteasome regulatory subunit, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	98.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.0	97.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.1	96.8	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.8	94.9	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.5	94.3	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	1e-152	539	Ptp.7849.1.S1_at	CV225706	hypothetical protein	-	5e-13	At4g03390	SRF3 (STRUBBELIG-RECEPTOR FAMILY 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-8	59	PtpAffx.74807.1.S1_at	CV225788	-	-	5e-11	At5g49760	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-8	59	PtpAffx.205597.1.S1_at	pmrna11050	hypothetical protein	-	7e-8	At5g42120	lectin protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-6	52	PtpAffx.216145.1.S1_at	pmrna30754	hypothetical protein	-	5e-12	At3g13065	SRF4 (STRUBBELIG-RECEPTOR FAMILY 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	2e-4	48	PtpAffx.64358.1.S1_at	CN549925	hypothetical protein	-	6e-7	At4g03390	SRF3 (STRUBBELIG-RECEPTOR FAMILY 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-4	48	PtpAffx.208404.1.S1_at	pmrna16704	hypothetical protein	-	1e-7	At1g69910	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-4	48	Ptp.4615.1.S1_s_at	CN523657	hypothetical protein	-	2e-21	At1g53730	SRF6 (STRUBBELIG-RECEPTOR FAMILY 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-4	48	Ptp.4615.1.S1_at	CN523657	hypothetical protein	-	2e-21	At1g53730	SRF6 (STRUBBELIG-RECEPTOR FAMILY 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-4	48	Ptp.2221.1.A1_at	CV231780	hypothetical protein	-	9e-40	At1g53730	SRF6 (STRUBBELIG-RECEPTOR FAMILY 6)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	5e-16	85	Arabidopsis thaliana	At4g03390	827941	SRF3 (STRUBBELIG-RECEPTOR FAMILY 3)	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.56	1e-38	161	Glycine max	Gma.17727.2.S1_at	BI787706	-	-	3e-10	At4g03390	SRF3 (STRUBBELIG-RECEPTOR FAMILY 3)	C.G.	S.X.	Please select
0.07	1e-2	40	Hordeum vulgare	Contig19639_at	Contig19639	-	-	8e-3	At2g43230	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.08	2e-4	48	Oryza sativa	Os03g0183800	AK100621.1	-	-	9e-8	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	1e-4	48	Triticum aestivum	Ta.27027.1.S1_at	CA596068	-	-	9e-34	At4g22130	SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)	C.G.	S.X.	Please select
0.07	5e-10	63	Vitis vinifera	1611562_at	CF211645	hypothetical protein LOC100247008	-	2e-1	At4g03390	SRF3 (STRUBBELIG-RECEPTOR FAMILY 3)	C.G.	S.X.	Please select
0.11	2e-7	56	Zea mays	Zm.11939.1.A1_at	CF624620	-	-	7e-21	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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