Gene omics information

Query gene ID	PtpAffx.11720.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	87.0	PtpAffx.11720.1.S1_at	CV256791	hypothetical protein	-	1e-5	At5g61210	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.114764.1.A1_at	CV244671	-	-	2e+0	At2g43550	trypsin inhibitor, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.204811.1.S1_at	pmrna9484	hypothetical protein	-	1e-14	At5g13500	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	Ptp.5068.1.S1_a_at	DN483716	hypothetical protein	-	6e-3	At3g29170	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.5068.2.A1_a_at	CV247817	hypothetical protein	-	6e-3	At3g29170	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.3736.1.A1_at	CV256427	hypothetical protein	-	3e-24	At3g54020	phosphatidic acid phosphatase-related / PAP2-related	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.2	99.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.6	97.9	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.2	96.8	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	3e-84	313	PtpAffx.125836.1.A1_at	BP934176	hypothetical protein	-	3e-1	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	1e-15	85	PtpAffx.207886.1.S1_at	pmrna15657	hypothetical protein	-	6e-26	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	1e-15	85	PtpAffx.131888.1.S1_s_at	BU831354	hypothetical protein	-	9e-2	At5g61210	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.144292.1.S1_at	BU876268	hypothetical protein	-	2e+0	At5g19240	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	9e-1	36	PtpAffx.29726.1.A1_s_at	CV249620	hypothetical protein	-	1e-28	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.210692.1.S1_at	pmrna20963	-	-	1e-176	At5g50920	CLPC1	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.206036.1.S1_s_at	pmrna11960	global transcription factor group	-	2e-31	At1g65440	GTB1	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.154638.1.S1_s_at	CX653559	hypothetical protein	-	1e-79	At5g50920	CLPC1	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	36	PtpAffx.11665.1.A1_at	CV257387	hypothetical protein	-	2e-14	At2g21600	ATRER1B	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-5	52	Arabidopsis thaliana	At5g61210	836242	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	membrane localized t-SNARE SNAP25 homologue, probably involved in cytokinesis and cell plate formation	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	3e-7	57	Glycine max	Gma.2055.1.S1_s_at	AW348801	-	-	5e-6	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	C.G.	S.X.	Please select
0.02	3e-1	36	Hordeum vulgare	HY03I16T_at	HY03I16T	-	-	4e+0	At5g20100	unknown protein	C.G.	S.X.	Please select
0.03	9e-5	50	Oryza sativa	Os03g0212400	AK064327.1	-	SNAP25 homologous protein SNAP33 (AtSNAP33)(Synaptosomal-associated protein SNAP25-like 1) (SNAP-25like protein 1) (Snap25a)	3e-3	At5g61210	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+1	32	Triticum aestivum	TaAffx.12248.1.S1_at	BJ283082	-	-	7e-2	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	C.G.	S.X.	Please select
0.10	1e-18	93	Vitis vinifera	1622786_at	CF207035.1	hypothetical protein LOC100246765	-	2e-8	At5g61210	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	C.G.	S.X.	Please select
0.04	3e-1	36	Zea mays	Zm.19178.1.S1_at	CO517732	hypothetical protein LOC100193037	-	2e+0	At5g07880	SNAP29	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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