Gene omics information

Query gene ID PtpAffx.1172.2.A1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6588.6PtpAffx.1172.2.A1_atCV232336--1e+0At1g48780unknown proteinS.X.H.G.
0.5784.2PtpAffx.203080.1.S1_atpmrna6095hypothetical protein-3e-24At3g51470protein phosphatase 2C, putative / PP2C, putativeS.X.H.G.
0.5078.6PtpAffx.214837.1.S1_atpmrna28728white-brown-complex ABC transporter family-4e-3At4g27420ABC transporter family proteinS.X.H.G.
0.3255.2PtpAffx.63071.1.A1_atCV255719--1e-1At4g19200proline-rich family proteinS.X.H.G.
0.3255.2PtpAffx.203223.1.S1_atpmrna6387hypothetical protein-4e-18At1g63120ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)S.X.H.G.
0.3255.2PtpAffx.204982.1.S1_s_atpmrna9866hypothetical protein-3e-12At5g59790unknown proteinS.X.H.G.
0.3052.0Ptp.5560.1.A1_atCK087847hypothetical protein-5e+0At5g52040ATRSP41S.X.H.G.
0.2950.5PtpAffx.202007.1.S1_atpmrna4000amino acid transporter-2e-1At1g52040MBP1 (MYROSINASE-BINDING PROTEIN 1)S.X.H.G.
0.2747.1PtpAffx.213868.1.S1_atpmrna27051hypothetical protein-3e-46At3g27440uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putativeS.X.H.G.
0.2747.1PtpAffx.21546.1.S1_atDN494511hypothetical protein-4e+0At4g01460basic helix-loop-helix (bHLH) family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
25.099.9GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
10.799.1GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
9.298.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
6.797.9GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
4.295.6GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
3.794.7GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
3.594.3GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.393.7GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue series
2.992.5GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue series
1.987.2GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.640965PtpAffx.1172.1.S1_atDN493694hypothetical protein-2e-19At5g22400rac GTPase activating protein, putativeC.G.S.X.
0.221e-47190PtpAffx.1172.3.S1_a_atBU894759hypothetical protein-2e-14At3g11490rac GTPase activating protein, putativeC.G.S.X.
0.333e-42173Ptp.1194.1.A1_atCK090022--3e+0At5g13120peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinC.G.S.X.
0.062e-654Ptp.3327.1.S1_s_atCV264775hypothetical protein-5e-4At5g62350invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)C.G.S.X.
0.062e-654Ptp.3327.1.S1_atCV264775hypothetical protein-5e-4At5g62350invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)C.G.S.X.
0.035e-136PtpAffx.8534.1.S1_s_atCV236695hypothetical protein-7e-3At1g56580unknown proteinC.G.S.X.
0.035e-136PtpAffx.60991.1.S1_a_atCK107569--1e+0At5g07100WRKY26C.G.S.X.
0.035e-136PtpAffx.60991.1.S1_atCK107569--1e+0At5g07100WRKY26C.G.S.X.
0.025e-136PtpAffx.4311.1.A1_atCK101732--2e-1At5g15853unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+034Arabidopsis thalianaAt1g48780841300unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO---C.G.S.X.
0.041e-138Glycine maxPsAffx.CL819Contig1_atPsAffx.CL819Contig1--4e+0At3g22240unknown proteinC.G.S.X.
0.043e+032Hordeum vulgareHF03K12r_x_atHF03K12r--9e+0At4g30993unknown proteinC.G.S.X.
0.021e+132Oryza sativaOs06g05263009634.m03139--2e+0At5g45113mitochondrial transcription termination factor-related / mTERF-relatedC.G.S.X.
0.036e+032Triticum aestivumTaAffx.110920.1.S1_atCA649386--4e+0At5g23740RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)C.G.S.X.
0.032e+032Vitis vinifera1609642_atCD797738--9e-1At5g16880VHS domain-containing protein / GAT domain-containing proteinC.G.S.X.
0.036e-134Zea maysZm.1604.1.S1_atBF728928--4e+0At5g05650-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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