Gene omics information

Query gene ID	PtpAffx.1172.2.A1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.65	88.6	PtpAffx.1172.2.A1_at	CV232336	-	-	1e+0	At1g48780	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.203080.1.S1_at	pmrna6095	hypothetical protein	-	3e-24	At3g51470	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.214837.1.S1_at	pmrna28728	white-brown-complex ABC transporter family	-	4e-3	At4g27420	ABC transporter family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.63071.1.A1_at	CV255719	-	-	1e-1	At4g19200	proline-rich family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.203223.1.S1_at	pmrna6387	hypothetical protein	-	4e-18	At1g63120	ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.204982.1.S1_s_at	pmrna9866	hypothetical protein	-	3e-12	At5g59790	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	Ptp.5560.1.A1_at	CK087847	hypothetical protein	-	5e+0	At5g52040	ATRSP41	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.202007.1.S1_at	pmrna4000	amino acid transporter	-	2e-1	At1g52040	MBP1 (MYROSINASE-BINDING PROTEIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.213868.1.S1_at	pmrna27051	hypothetical protein	-	3e-46	At3g27440	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.21546.1.S1_at	DN494511	hypothetical protein	-	4e+0	At4g01460	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.0	99.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
10.7	99.1	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
9.2	98.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.7	97.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3	93.7	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.64	0	965	PtpAffx.1172.1.S1_at	DN493694	hypothetical protein	-	2e-19	At5g22400	rac GTPase activating protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	1e-47	190	PtpAffx.1172.3.S1_a_at	BU894759	hypothetical protein	-	2e-14	At3g11490	rac GTPase activating protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.33	3e-42	173	Ptp.1194.1.A1_at	CK090022	-	-	3e+0	At5g13120	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	2e-6	54	Ptp.3327.1.S1_s_at	CV264775	hypothetical protein	-	5e-4	At5g62350	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	2e-6	54	Ptp.3327.1.S1_at	CV264775	hypothetical protein	-	5e-4	At5g62350	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	PtpAffx.8534.1.S1_s_at	CV236695	hypothetical protein	-	7e-3	At1g56580	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	PtpAffx.60991.1.S1_a_at	CK107569	-	-	1e+0	At5g07100	WRKY26	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	PtpAffx.60991.1.S1_at	CK107569	-	-	1e+0	At5g07100	WRKY26	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.4311.1.A1_at	CK101732	-	-	2e-1	At5g15853	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At1g48780	841300	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	38	Glycine max	PsAffx.CL819Contig1_at	PsAffx.CL819Contig1	-	-	4e+0	At3g22240	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	32	Hordeum vulgare	HF03K12r_x_at	HF03K12r	-	-	9e+0	At4g30993	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	32	Oryza sativa	Os06g0526300	9634.m03139	-	-	2e+0	At5g45113	mitochondrial transcription termination factor-related / mTERF-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Triticum aestivum	TaAffx.110920.1.S1_at	CA649386	-	-	4e+0	At5g23740	RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1609642_at	CD797738	-	-	9e-1	At5g16880	VHS domain-containing protein / GAT domain-containing protein	C.G.	S.X.	Please select
0.03	6e-1	34	Zea mays	Zm.1604.1.S1_at	BF728928	-	-	4e+0	At5g05650	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage