CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.116755.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 87.0 PtpAffx.116755.1.A1_at CK089718 - - 6e-1 At1g80160 lactoylglutathione lyase family protein / glyoxalase I family protein S.X. H.G.
0.44 71.9 PtpAffx.221219.1.S1_at pmrna37938 hypothetical protein - 3e-1 At1g15680 F-box family protein S.X. H.G.
0.36 61.6 PtpAffx.37354.1.A1_at CV255380 - - 5e-1 At1g55990 glycine-rich protein S.X. H.G.
0.23 40.5 PtpAffx.212939.1.S1_at pmrna25319 hypothetical protein - 2e-8 At5g07380 unknown protein S.X. H.G.
0.23 40.5 PtpAffx.207643.1.S1_at pmrna15162 hypothetical protein - 3e-1 At3g57390 AGL18 S.X. H.G.
0.17 29.1 PtpAffx.203574.1.S1_s_at pmrna7102 hypothetical protein - 2e-3 At1g67030 ZFP6 (ZINC FINGER PROTEIN 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.1 99.4 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
12.9 99.3 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
6.3 97.7 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
6.3 97.7 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8 92.1 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 2e-48 192 Ptp.3969.1.S1_s_at BU867417 hypothetical protein - 2e-18 At5g22800 EMB1030 (EMBRYO DEFECTIVE 1030) C.G. S.X.
0.57 4e-43 174 PtpAffx.49535.1.A1_at CV281624 - - 1e-18 At5g22800 EMB1030 (EMBRYO DEFECTIVE 1030) C.G. S.X.
0.01 2e-1 36 PtpAffx.225185.1.S1_at pmrna44339 tir-nbs-lrr resistance protein - 1e-1 At5g44870 disease resistance protein (TIR-NBS-LRR class), putative C.G. S.X.
0.04 2e-1 36 PtpAffx.148931.1.S1_at CF229441 hypothetical protein - 1e-4 At1g49590 formin-binding protein-related C.G. S.X.
0.04 2e-1 36 PtpAffx.125555.1.A1_at DN492777 - - 3e-1 At2g44740 CYCP4 C.G. S.X.
0.03 8e-1 34 PtpAffx.20862.1.A1_at CV236320 hypothetical protein - 5e-29 At2g33740 CUTA C.G. S.X.
0.03 3e+0 32 PtpAffx.90659.2.A1_a_at CK097698 amino acid transporter - 2e+0 At3g43540 unknown protein C.G. S.X.
0.04 3e+0 32 PtpAffx.88591.1.A1_s_at CV259964 - - 8e-1 At2g46190 - C.G. S.X.
0.04 3e+0 32 PtpAffx.60092.1.S1_at DN499696 - - 9e-1 At2g20208 LCR60 (Low-molecular-weight cysteine-rich 60) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-1 34 Arabidopsis thaliana At1g80160 844356 lactoylglutathione lyase family protein / glyoxalase I family protein F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:unknown;BPO - - - C.G. S.X.
0.04 3e+0 32 Glycine max HgAffx.3284.1.A1_at CK351814 - - 8e-1 At5g02140 thaumatin-like protein, putative C.G. S.X.
0.05 5e+0 30 Hordeum vulgare rbags25d13_at rbags25d13 - - 2e+0 At3g01440 oxygen evolving enhancer 3 (PsbQ) family protein C.G. S.X.
0.06 5e+0 32 Oryza sativa OsAffx.15635.1.S1_at - - - 0 C.G. S.X.
0.04 6e-1 34 Triticum aestivum TaAffx.24245.1.S1_at CA723290 - - 1e+1 At5g61410 RPE C.G. S.X.
0.04 7e-1 32 Vitis vinifera 1613848_at CF568786 - - 4e-9 At3g55520 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative C.G. S.X.
0.04 4e+0 30 Zea mays Zm.468.1.A1_at AF178951.1 voltage-dependent anion channel protein 1b - 1e-5 At5g15090 VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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