Gene omics information

Query gene ID	PtpAffx.116322.1.S1_at
Gene name	histone acetyltransferase /// histone acetyltransferase
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	PtpAffx.116322.1.S1_at	CK106873	histone acetyltransferase /// histone acetyltransferase	-	1e-34	At1g79000	HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.3857.1.S1_s_at	BU884442	hypothetical protein	-	6e-31	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.5819.1.S1_at	CK114175	hypothetical protein	-	3e-18	At5g59420	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.151342.1.S1_at	CX176710	hypothetical protein	-	4e-87	At5g17020	XPO1A	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.146086.1.S1_s_at	CX180124	hypothetical protein	-	3e-20	At5g38830	tRNA synthetase class I (C) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.131455.1.S1_s_at	CK102810	hypothetical protein	-	7e-39	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.6	96.2	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	6e-3	42	PtpAffx.204059.1.S1_at	pmrna8005	histone acetyltransferase	-	1e-18	At3g12980	HAC5	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	6e-3	42	PtpAffx.204059.1.S1_s_at	pmrna8005	histone acetyltransferase	-	1e-18	At3g12980	HAC5	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-2	38	PtpAffx.220146.1.S1_at	pmrna36497	condensin complex components subunit	-	7e-111	At3g47460	ATSMC2	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-1	36	PtpAffx.224061.1.S1_s_at	pmrna42296	hypothetical protein	-	3e+0	At4g04190	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-1	36	PtpAffx.223535.1.S1_s_at	pmrna41586	hypothetical protein	-	4e-2	At4g10465	metal ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	34	PtpAffx.82281.1.A1_at	CV253270	-	-	1e+0	At4g06744	leucine-rich repeat family protein / extensin family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.69766.1.A1_at	CV244178	-	-	1e+0	At3g58600	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.223652.1.S1_at	pmrna41744	hypothetical protein	-	5e-5	At1g80080	TMM (TOO MANY MOUTHS)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.204359.1.S1_s_at	pmrna8568	hypothetical protein	-	4e-24	At2g16650	antiporter/ drug transporter	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	1e-34	147	Arabidopsis thaliana	At1g79000	844241	HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1)	Homologous to CREB-binding protein, a co-activator of transcription with histone acetyl-transferase activity. No single prior lysine acetylation is sufficient to block HAC1 acetylation of the H3 or H4 peptides, suggesting that HAC1, HAC5, and HAC12 can acetylate any of several lysines present in the peptides. HAM2 acetylates histone H4 lysine 5. A plant line expressing an RNAi construct targeted against HAC1 has reduced rates of agrobacterium-mediated root transformation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.32	5e-31	135	Glycine max	GmaAffx.92632.1.S1_at	CF808357	-	-	1e-3	At1g79000	HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1)	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HT12A14r_at	HT12A14r	-	-	6e-1	At3g28270	-	C.G.	S.X.	Please select
0.04	5e-1	36	Oryza sativa	Os04g0374150	9632.m02894	-	-	3e+0	At3g23637	DVL21 (DEVIL 21)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-4	46	Triticum aestivum	Ta.10922.1.S1_at	CD454276	-	-	9e-10	At1g16710	HAC12 (histone acetyltransferase of the CBP family 12)	C.G.	S.X.	Please select
0.40	7e-70	262	Vitis vinifera	1611132_at	CF510691	hypothetical protein LOC100251243	-	4e-29	At1g79000	HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1)	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	Zm.6297.1.A1_at	AI691305	-	-	1e+1	At5g61412	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage