CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.11627.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 PtpAffx.11627.1.A1_at CV258538 - - 7e-1 At2g30933 - S.X. H.G.
0.60 86.0 PtpAffx.205095.1.S1_at pmrna10095 argonaute protein group - 1e-10 At1g48410 AGO1 (ARGONAUTE 1) S.X. H.G.
0.44 71.9 PtpAffx.69627.1.A1_s_at CV249641 hypothetical protein - 5e+0 At5g04760 myb family transcription factor S.X. H.G.
0.42 68.6 PtpAffx.37729.1.A1_at CV241217 - - 4e+0 At5g65080 MAF5 (MADS AFFECTING FLOWERING 5) S.X. H.G.
0.39 64.6 PtpAffx.147259.1.A1_at CV243754 hypothetical protein - 1e-1 At1g80170 polygalacturonase, putative / pectinase, putative S.X. H.G.
0.36 61.6 PtpAffx.208321.1.S1_at pmrna16545 hypothetical protein - 4e-40 At1g24120 ARL1 (ARG1-LIKE 1) S.X. H.G.
0.30 52.0 PtpAffx.127897.1.A1_at CV240494 hypothetical protein - 3e+0 At5g53486 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.6 99.3 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
9.8 98.9 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.9 97.4 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.8 97.4 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.8 96.4 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7 91.8 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.65 1e-77 289 PtpAffx.114181.1.A1_at CV268152 - - 3e+0 At2g31570 ATGPX2 (GLUTATHIONE PEROXIDASE 2) C.G. S.X.
0.05 3e-56 218 PtpAffx.211342.1.S1_at pmrna22234 hypothetical protein - 1e-2 At5g60490 FLA12 C.G. S.X.
0.05 3e-56 218 PtpAffx.211342.1.S1_x_at pmrna22234 hypothetical protein - 1e-2 At5g60490 FLA12 C.G. S.X.
0.36 7e-48 190 PtpAffx.92772.2.S1_at DN495937 hypothetical protein - 5e+0 At5g02080 DNA/panthothenate metabolism flavoprotein family protein C.G. S.X.
0.38 1e-37 157 PtpAffx.54755.1.S1_at DN498989 - - 3e+0 At5g28885 unknown protein C.G. S.X.
0.29 6e-30 131 PtpAffx.11691.1.S1_at CV256480 hypothetical protein - 7e+0 At5g33210 SRS8 (SHI-RELATED SEQUENCE 8) C.G. S.X.
0.16 3e-13 75 PtpAffx.94932.1.A1_at CV266150 - - 3e-1 At5g18820 EMB3007 (embryo defective 3007) C.G. S.X.
0.05 1e-6 54 PtpAffx.225287.1.S1_x_at pmrna44528 hypothetical protein - 4e-1 At5g11130 exostosin family protein C.G. S.X.
0.05 1e-6 54 PtpAffx.225287.1.S1_at pmrna44528 hypothetical protein - 4e-1 At5g11130 exostosin family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-1 34 Arabidopsis thaliana At2g30933 3767975 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO - - - C.G. S.X.
0.04 1e+0 34 Glycine max Gma.16952.1.A1_at AW310236 - - 8e-4 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) C.G. S.X.
0.06 1e+0 32 Hordeum vulgare HV_CEb0003O01r2_x_at HV_CEb0003O01r2 - - 3e-1 At5g40382 cytochrome-c oxidase C.G. S.X.
0.05 1e+0 34 Oryza sativa OsAffx.5622.1.S1_at - - - 0 C.G. S.X.
0.05 1e+1 30 Triticum aestivum TaAffx.83818.1.S1_at CA650417 - - 2e-1 At1g66560 WRKY64 C.G. S.X.
0.04 2e-1 34 Vitis vinifera 1607388_at CF204480.1 - - 3e-26 At5g23750 remorin family protein C.G. S.X.
0.04 1e+0 32 Zea mays ZmAffx.201.1.A1_at AI670148 - - 3e+0 At2g27740 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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