CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.11623.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.11623.1.A1_at CV260515 hypothetical protein - 8e-25 At5g09850 transcription elongation factor-related S.X. H.G.
0.60 86.0 PtpAffx.13792.2.S1_at CV283738 hypothetical protein - 7e-14 At4g10610 CID12 S.X. H.G.
0.50 78.6 Ptp.824.1.S1_x_at CF936396 hypothetical protein - 2e+0 At4g20250 unknown protein S.X. H.G.
0.50 78.6 PtpAffx.20260.2.S1_a_at CV257316 hypothetical protein - 1e-3 At4g22190 unknown protein S.X. H.G.
0.44 71.9 PtpAffx.692.1.S1_x_at CX185889 hypothetical protein - 1e-1 At5g23950 C2 domain-containing protein S.X. H.G.
0.39 64.6 Ptp.3673.1.S1_s_at CK096543 hypothetical protein - 6e-1 At4g00355 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.2 98.8 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
6.6 97.9 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.4 97.7 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.6 96.2 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4 94.0 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.97 0 1364 PtpAffx.11623.1.A1_a_at CV260515 hypothetical protein - 8e-25 At5g09850 transcription elongation factor-related C.G. S.X.
0.62 6e-153 541 PtpAffx.11623.2.S1_at BU816424 hypothetical protein - 4e-1 At5g09850 transcription elongation factor-related C.G. S.X.
0.08 1e-12 75 PtpAffx.34653.1.S1_at DN500767 - - 2e+0 At4g25570 ACYB-2 C.G. S.X.
0.01 1e-2 42 PtpAffx.214040.1.S1_at pmrna27340 hypothetical protein - 8e-23 At5g12000 kinase C.G. S.X.
0.01 2e-1 38 PtpAffx.207458.1.S1_at pmrna14805 hypothetical protein - 4e-9 At3g20190 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.01 2e-1 38 PtpAffx.201598.1.S1_s_at pmrna3144 hypothetical protein - 5e-16 At4g24200 - C.G. S.X.
0.01 2e-1 38 PtpAffx.201084.1.S1_at pmrna2145 hypothetical protein - 2e-1 At1g20450 ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10) C.G. S.X.
0.02 2e-1 38 PtpAffx.160058.1.A1_at CV230119 hypothetical protein - 7e-3 At4g00905 - C.G. S.X.
0.02 9e-1 36 PtpAffx.70110.1.A1_at CV231609 hypothetical protein - 3e-31 At4g00110 GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 8e-25 115 Arabidopsis thaliana At5g09850 830845 transcription elongation factor-related F:protein binding, transcription regulator activity, DNA binding;P:transcription;C:cytosol;MPOFBV - - - C.G. S.X.
0.19 4e-9 63 Glycine max Gma.2814.2.S1_at BE474590 - - 2e-7 At5g09850 transcription elongation factor-related C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig26531_at Contig26531 - - 7e-5 At3g50550 unknown protein C.G. S.X.
0.04 8e-2 40 Oryza sativa Os12g0165700 CB663072 - Transcription factors TFIIS, elongin A, CRSP70,conserved domain containing protein 2e-1 At5g09850 transcription elongation factor-related C.G. S.X.
0.02 4e-2 40 Triticum aestivum TaAffx.70755.1.S1_at CA678802 - - 4e+0 At2g31490 unknown protein C.G. S.X.
0.08 1e-14 79 Vitis vinifera 1622579_at CF212817 hypothetical protein LOC100262291 - 3e-11 At5g09850 transcription elongation factor-related C.G. S.X.
0.03 7e-2 38 Zea mays Zm.2390.1.S1_at CF628678 hypothetical protein LOC100276791 - 1e-1 At5g09850 transcription elongation factor-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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