CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.115945.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.115945.1.S1_s_at CN521589 hypothetical protein - 5e-2 At4g00355 unknown protein S.X. H.G.
0.73 93.6 PtpAffx.113369.1.S1_at CX185014 NAC domain protein, IPR003441 - 5e-26 At1g33060 no apical meristem (NAM) family protein S.X. H.G.
0.73 93.6 Ptp.5801.2.S1_a_at BU836809 hypothetical protein - 2e+0 At1g24440 protein binding / zinc ion binding S.X. H.G.
0.60 86.0 PtpAffx.17886.2.S1_s_at CX183909 hypothetical protein - 9e-2 At5g16490 RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4) S.X. H.G.
0.42 68.6 PtpAffx.10860.1.S1_at CK116620 hypothetical protein - 4e-1 At5g64890 PROPEP2 (Elicitor peptide 2 precursor) S.X. H.G.
0.31 53.7 PtpAffx.12733.1.S1_at CK102307 hypothetical protein - 4e+0 At4g33465 SCRL22 (SCR-Like 22) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.6 99.0 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.4 98.2 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.9 98.0 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.8 98.0 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.6 97.9 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.9 95.1 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 0 700 PtpAffx.211549.1.S1_at pmrna22632 hypothetical protein - 3e-3 At4g00355 unknown protein C.G. S.X.
0.48 0 698 Ptp.3673.1.S1_s_at CK096543 hypothetical protein - 6e-1 At4g00355 unknown protein C.G. S.X.
0.43 1e-74 280 PtpAffx.150530.1.S1_at CX187047 hypothetical protein - 8e-6 At4g00355 unknown protein C.G. S.X.
0.03 2e-2 40 PtpAffx.208365.1.S1_at pmrna16636 hypothetical protein - 8e-12 At3g06140 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 8e-2 38 PtpAffx.34991.1.A1_at CV261322 hypothetical protein - 6e-50 At4g26610 D6PKL1 (D6 PROTEIN KINASE LIKE 1) C.G. S.X.
0.03 3e-1 36 PtpAffx.210434.1.S1_at pmrna20487 hypothetical protein - 1e-4 At1g73850 structural constituent of ribosome C.G. S.X.
0.03 3e-1 36 PtpAffx.208604.1.S1_at pmrna17076 flavine-containing monoxygenase - 2e-28 At2g33230 flavin-containing monooxygenase, putative / FMO, putative C.G. S.X.
0.02 1e+0 34 PtpAffx.78734.1.A1_at CV261795 hypothetical protein - 3e-12 At5g51400 unknown protein C.G. S.X.
0.04 1e+0 34 PtpAffx.25123.1.A1_at CV231764 hypothetical protein - 2e-2 At3g29000 calcium-binding EF hand family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 5e-2 38 Arabidopsis thaliana At4g00355 827659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.24 1e-19 97 Glycine max GmaAffx.82760.2.S1_at BM309478 - - 6e-5 At2g45980 unknown protein C.G. S.X.
0.03 4e-1 34 Hordeum vulgare HVSMEm0018O23r2_at HVSMEm0018O23r2 - - 1e-3 At4g23150 protein kinase family protein C.G. S.X.
0.05 7e-3 42 Oryza sativa Os02g0821900 AK071088.1 - Conserved hypothetical protein 2e-1 At4g00355 unknown protein C.G. S.X.
0.04 1e+1 30 Triticum aestivum TaAffx.7646.1.S1_at CA654915 - - 4e+0 At1g01490 heavy-metal-associated domain-containing protein C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1621782_at CD802296 hypothetical protein LOC100265088 - 1e-15 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) C.G. S.X.
0.04 2e+0 32 Zea mays Zm.6189.3.S1_at AI677605 Translationally controlled tumor protein-like protein - 1e-2 At5g18580 FASS (FASS 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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