Gene omics information

Query gene ID	PtpAffx.11494.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	PtpAffx.11494.1.S1_at	CV260585	hypothetical protein	-	1e-3	At3g44380	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.95698.1.A1_s_at	CV235344	hypothetical protein	-	2e-8	At1g06190	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.153857.1.A1_at	CV239742	-	-	2e-5	At3g47450	NOA1 (NO ASSOCIATED 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.32368.1.S1_a_at	CV278073	hypothetical protein	-	7e-40	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.207374.1.S1_at	pmrna14628	hypothetical protein	-	4e-82	At5g66470	GTP binding / RNA binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.32368.2.A1_at	CV238018	hypothetical protein	-	3e-49	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.211806.1.S1_at	pmrna23151	hypothetical protein	-	2e-37	At2g48120	PAC (PALE CRESS)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	97.7	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.3	96.9	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	36	Ptp.696.1.A1_at	BP936633	hypothetical protein	-	2e-2	At1g13990	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.30166.1.S1_at	CV243807	hypothetical protein	-	5e-10	At3g56650	thylakoid lumenal 20 kDa protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.216095.1.S1_at	pmrna30668	hypothetical protein	-	0	At5g54260	MRE11 (meiotic recombination 11)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.203117.1.S1_at	pmrna6177	hypothetical protein	-	3e-90	At4g19040	EDR2	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.200734.1.S1_at	pmrna1411	hypothetical protein	-	1e-12	At5g58670	PLC1 (PHOSPHOLIPASE C 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	Ptp.1743.1.A1_a_at	CV271562	hypothetical protein	-	3e-45	At4g26300	emb1027 (embryo defective 1027)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	8e+0	32	PtpAffx.9849.1.S1_at	BU893598	-	-	2e-1	At1g69580	transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e+0	32	PtpAffx.8914.1.S1_at	BU816761	-	-	2e+0	At2g22800	HAT9	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e+0	32	PtpAffx.3558.1.S1_a_at	AB120627.1	hypothetical protein	-	6e-3	At4g08850	kinase	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	1e-3	44	Arabidopsis thaliana	At3g44380	823563	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	3e-8	59	Glycine max	GmaAffx.17889.2.S1_at	BQ453127	-	-	6e-5	At3g44380	-	C.G.	S.X.	Please select
0.03	2e-1	36	Hordeum vulgare	Contig22174_at	Contig22174	-	-	5e+0	Atmg01350	-	C.G.	S.X.	Please select
0.03	2e-1	38	Oryza sativa	OsAffx.23376.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Triticum aestivum	Ta.17066.2.S1_at	CA617784	-	-	4e+0	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	C.G.	S.X.	Please select
0.04	4e-1	34	Vitis vinifera	1606776_at	CD798463	-	-	2e+0	At4g24230	ACBP3 (ACYL-COA-BINDING DOMAIN 3)	C.G.	S.X.	Please select
0.02	1e+1	30	Zea mays	Zm.8214.1.A1_at	BM075490	hypothetical protein LOC100279596	-	2e-6	At5g58900	myb family transcription factor	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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