CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.11483.2.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 PtpAffx.11483.2.A1_at CK106946 hypothetical protein - 7e-2 At2g21790 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) S.X. H.G.
0.67 91.1 PtpAffx.13609.1.S1_at CX167472 hypothetical protein - 2e-11 At1g30440 phototropic-responsive NPH3 family protein S.X. H.G.
0.60 86.0 Ptp.2544.1.A1_at CK087698 hypothetical protein - 1e-12 At3g24660 TMKL1 (transmembrane kinase-like 1) S.X. H.G.
0.50 78.6 Ptp.478.1.A1_at CK087253 hypothetical protein - 4e-1 At4g25410 DNA binding / transcription factor S.X. H.G.
0.46 73.7 PtpAffx.106138.1.S1_at BU889364 - - 2e+0 At4g17585 unknown protein S.X. H.G.
0.43 69.7 Ptp.7764.1.S1_at DN489656 hypothetical protein - 5e+0 At5g49170 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.2 99.4 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.1 98.1 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.0 98.0 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.9 97.4 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.7 97.3 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.7 97.3 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.5 97.1 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.6 96.2 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.6 96.2 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 5e-56 218 PtpAffx.205229.1.S1_s_at pmrna10368 hypothetical protein - 0 At2g21790 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) C.G. S.X.
0.27 5e-56 218 PtpAffx.11483.1.A1_at CA821669 hypothetical protein - 2e-29 At2g21790 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) C.G. S.X.
0.01 1e-3 44 PtpAffx.224231.1.S1_at pmrna42597 hypothetical protein - 7e-123 At1g43850 SEU (seuss) C.G. S.X.
0.06 6e-3 42 PtpAffx.205619.1.S1_at pmrna11099 hypothetical protein - 5e-74 At2g21790 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) C.G. S.X.
0.02 6e-3 42 PtpAffx.200064.1.S1_at pmrna117 hypothetical protein - 5e-24 At2g18220 - C.G. S.X.
0.04 9e-2 38 PtpAffx.25630.1.A1_at AJ772325 magnesium transporter - 1e-6 At3g58970 magnesium transporter CorA-like family protein C.G. S.X.
0.01 9e-2 38 PtpAffx.203772.1.S1_at pmrna7452 chromatin remodeling complex subunit - 1e-43 At1g61140 EDA16 (embryo sac development arrest 16) C.G. S.X.
0.03 9e-2 38 PtpAffx.203.3.A1_at CV269424 hypothetical protein - 3e-1 At3g50960 PLP3a (Phosducin-like protein 3 homolog) C.G. S.X.
0.04 9e-2 38 PtpAffx.202453.1.S1_at pmrna4911 hypothetical protein - 6e+0 At4g26960 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 7e-2 38 Arabidopsis thaliana At2g21790 816715 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) encodes large subunit of ribonucleotide reductase involved in the production of deoxyribonucleoside triphosphates (dNTPs) for DNA replication and repair - - - C.G. S.X.
0.08 4e-16 85 Glycine max Gma.9608.1.S1_at AF118785.1 ribonucleotide reductase large subunit B - 2e-141 At2g21790 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) C.G. S.X.
0.04 1e-1 36 Hordeum vulgare HVSMEf0017C20f2_s_at HVSMEf0017C20f2 - - 3e+0 At3g55240 - C.G. S.X.
0.05 1e-4 48 Oryza sativa Os06g0168600 AK068858.1 - Ribonucleotide reductase 1e-96 At2g21790 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) C.G. S.X.
0.04 7e-2 38 Triticum aestivum Ta.4152.1.S1_at BJ259886 - - 4e-2 At4g22420 - C.G. S.X.
0.05 2e-2 38 Vitis vinifera 1619045_at CB341512 - - 2e+0 At4g04900 RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) C.G. S.X.
0.05 3e-2 38 Zea mays ZmAffx.228.1.A1_at AI670240 - - 5e-2 At5g59000 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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