Gene omics information

Query gene ID PtpAffx.114663.1.A1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9599.7PtpAffx.114663.1.A1_atCV249914--1e-3At1g08390nucleic acid bindingS.X.H.G.
0.2747.1Ptp.4071.2.S1_atCV232545hypothetical protein-8e-51At4g30330small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putativeS.X.H.G.
0.1729.1PtpAffx.56582.1.A1_s_atCV259479hypothetical protein-5e-2At1g75920family II extracellular lipase 5 (EXL5)S.X.H.G.
0.1626.9PtpAffx.9411.1.A1_atBP934185hypothetical protein-5e-9At2g39550PGGT-IS.X.H.G.
0.1321.6Ptp.4391.2.A1_s_atCV229557hypothetical protein-3e-14At1g32400TOM2A (TOBAMOVIRUS MULTIPLICATION 2A)S.X.H.G.
0.0914.6Ptp.643.1.S1_atCK087681hypothetical protein-2e-89At3g1460060S ribosomal protein L18A (RPL18aC)S.X.H.G.
0.0812.9Ptp.2609.2.S1_atCV283556hypothetical protein-4e-91At2g3161040S ribosomal protein S3 (RPS3A)S.X.H.G.
0.0711.6PtpAffx.22429.2.A1_a_atDN492140hypothetical protein-5e-7At5g5795026S proteasome regulatory subunit, putativeS.X.H.G.
0.0711.6PtpAffx.50167.1.A1_a_atCV256630tubulin folding cofactor-2e-28At3g10220tubulin folding cofactor BS.X.H.G.
0.069.8Ptp.7537.1.S1_s_atCV236898hypothetical protein-6e-57At5g65430GRF8 (GENERAL REGULATORY FACTOR 8)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
7.698.3GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue series
7.098.0GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.697.2GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue series
4.796.3GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue series
3.694.5GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.092.9GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.791.8GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.389.8GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.088.0GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.886.4GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.485e-127454PtpAffx.202719.1.S1_atpmrna5441hypothetical protein-1e-10At2g20360binding / catalytic/ coenzyme bindingC.G.S.X.
0.182e-49196PtpAffx.65994.1.S1_atDN496079hypothetical protein-2e-7At2g20360binding / catalytic/ coenzyme bindingC.G.S.X.
0.033e-240PtpAffx.99162.1.S1_atCV279989hypothetical protein-1e+0At2g17870cold-shock DNA-binding family proteinC.G.S.X.
0.033e-240PtpAffx.983.1.A1_atCX172753hypothetical protein-5e-10At5g64180unknown proteinC.G.S.X.
0.023e-240PtpAffx.9731.1.S1_atCV255821hypothetical protein-1e+1At5g44582unknown proteinC.G.S.X.
0.013e-240PtpAffx.9792.1.S1_s_atBP930774hypothetical protein-7e-24At1g49760PAB8 (POLY(A) BINDING PROTEIN 8)C.G.S.X.
0.033e-240PtpAffx.97498.1.S1_atCV246186--8e-2At4g09890unknown proteinC.G.S.X.
0.033e-240PtpAffx.95744.1.A1_atCV238553--1e-41At3g55280RPL23AB (RIBOSOMAL PROTEIN L23AB)C.G.S.X.
0.043e-240PtpAffx.95314.1.A1_atCV252554--4e-2At1g64930CYP89A7C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.101e-344Arabidopsis thalianaAt1g08390837359nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MP---C.G.S.X.
0.032e+034Glycine maxHgAffx.1684.1.A1_atCK351009--3e+0At2g20597-C.G.S.X.
0.032e+032Hordeum vulgareContig1968_s_atContig1968--5e+0At5g38180protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.042e+034Oryza sativaOs07g0410600NM_187805.1--1e+0At2g46400WRKY46C.G.S.X.
0.041e+034Triticum aestivumTaAffx.107830.1.S1_atCA694705--9e-1At5g17280unknown proteinC.G.S.X.
0.032e-238Vitis vinifera1616849_atCA809090--4e+0At5g23470NLI interacting factor (NIF) family proteinC.G.S.X.
0.035e-134Zea maysZm.13648.1.S1_atAY107241.1caleosin related protein-2e+0At1g70670caleosin-related family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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