Gene omics information

Query gene ID PtpAffx.114358.1.A1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5984.9PtpAffx.114358.1.A1_atCV262089--4e-1At2g41430ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15)S.X.H.G.
0.3661.6PtpAffx.102710.2.A1_atCV260444hypothetical protein-1e+0At5g53210SPCH (SPEECHLESS)S.X.H.G.
0.2850.5PtpAffx.206919.1.S1_atpmrna13737hypothetical protein-1e+0At2g40200basic helix-loop-helix (bHLH) family proteinS.X.H.G.
0.2850.5PtpAffx.50094.1.A1_atCV259120hypothetical protein-3e-20At5g64470unknown proteinS.X.H.G.
0.2441.8PtpAffx.5179.3.S1_a_atCV277722hypothetical protein-5e-4At2g42670unknown proteinS.X.H.G.
0.2238.3PtpAffx.216100.1.S1_atpmrna30680hypothetical protein-9e-12At4g27390unknown proteinS.X.H.G.
0.2034.6PtpAffx.111597.1.S1_atCV271927hypothetical protein-1e-17At1g42440-S.X.H.G.
0.1932.7PtpAffx.207127.1.S1_s_atpmrna14139hypothetical protein-2e-7At5g10060-S.X.H.G.
0.1321.6PtpAffx.1933.1.A1_atCV241786hypothetical protein-1e-19At1g08190vacuolar assembly protein, putative (VPS41)S.X.H.G.
0.1118.1PtpAffx.101422.1.A1_atCV265656hypothetical protein-2e-1At2g04066MATE efflux protein-relatedS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
6.497.7GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
4.796.3GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
3.794.7GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.794.7GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.594.3GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue series
3.393.7GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.293.5GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.193.2GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.193.2GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.389.8GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e-654PtpAffx.224256.1.S1_s_atpmrna42648hypothetical protein-4e-53At4g01810protein transport protein-relatedC.G.S.X.
0.053e-240PtpAffx.221016.1.S1_atpmrna37549hypothetical protein-2e-5At4g01810protein transport protein-relatedC.G.S.X.
0.053e-240PtpAffx.221016.1.S1_x_atpmrna37549hypothetical protein-2e-5At4g01810protein transport protein-relatedC.G.S.X.
0.041e-138PtpAffx.7053.1.S1_atCK103972--3e+0At2g41590unknown proteinC.G.S.X.
0.031e-138PtpAffx.69199.1.A1_atCV266992--8e-2At3g24280SMAP2 (small acidic protein 2)C.G.S.X.
0.021e-138PtpAffx.57073.1.A1_s_atCV279168thioredoxin m-5e-7At3g15360TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)C.G.S.X.
0.041e-138PtpAffx.29077.1.A1_s_atBP932827hypothetical protein-1e-28At4g01810protein transport protein-relatedC.G.S.X.
0.011e-138PtpAffx.224879.1.S1_atpmrna43783hypothetical protein-5e-65At4g01810protein transport protein-relatedC.G.S.X.
0.011e-138PtpAffx.224879.1.S1_x_atpmrna43783hypothetical protein-5e-65At4g01810protein transport protein-relatedC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.044e-136Arabidopsis thalianaAt2g41430818741ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15)Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2.---C.G.S.X.
0.041e-138Glycine maxGma.284.1.S1_atBI946253--3e+0Atmg00970-C.G.S.X.
0.044e-238Hordeum vulgareContig17124_atContig17124--6e-1At3g20180metal ion bindingC.G.S.X.
0.027e-136Oryza sativaOs01g0346700AK071793.1-Conserved hypothetical protein5e-4At1g75550glycine-rich proteinC.G.S.X.
0.032e+034Triticum aestivumTaAffx.66729.1.S1_atBG905281--8e-1At2g46690auxin-responsive family proteinC.G.S.X.
0.031e-136Vitis vinifera1615321_atCF414063hypothetical protein LOC100256286-2e-18At1g04550IAA12 (AUXIN-INDUCED PROTEIN 12)C.G.S.X.
0.036e-134Zea maysZm.4657.1.A1_atBM074106--8e-12At4g26610D6PKL1 (D6 PROTEIN KINASE LIKE 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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