Gene omics information

Query gene ID PtpAffx.112731.1.A1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.2PtpAffx.112731.1.A1_atCV239317--2e-18At1g52510hydrolase, alpha/beta fold family proteinS.X.H.G.
0.4471.9PtpAffx.6733.5.A1_atCV277665hypothetical protein-5e-8At3g01500CA1 (CARBONIC ANHYDRASE 1)S.X.H.G.
0.4067.0Ptp.6091.1.S1_atCV281339hypothetical protein-2e-33At4g13500unknown proteinS.X.H.G.
0.2950.5PtpAffx.53925.1.S1_atCK094571--7e-75At5g36700PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1)S.X.H.G.
0.2543.6Ptp.2781.1.S1_a_atCV255996hypothetical protein-5e-53At2g04700ferredoxin thioredoxin reductase catalytic beta chain family proteinS.X.H.G.
0.1932.7Ptp.5921.1.S1_atCV282816hypothetical protein-5e-36At4g04640ATPC1S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.998.7GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue series
8.698.6GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue series
4.996.5GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
4.596.1GSM372044Clone1979_LPI5_N+_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.295.6GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.095.3GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
3.995.1GSM372045Clone1979_LPI5_N+_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.794.7GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.794.7GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.393.7GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e-138PtpAffx.207661.1.S1_s_atpmrna15206hypothetical protein-4e-70At2g20280zinc finger (CCCH-type) family proteinC.G.S.X.
0.026e-136PtpAffx.50902.1.S1_atCV228202hypothetical protein-2e-2At1g71240unknown proteinC.G.S.X.
0.016e-136PtpAffx.210597.1.S1_atpmrna20787hypothetical protein-3e-22At1g19090RKF2 (receptor-like serine/threonine kinase 2)C.G.S.X.
0.032e+034PtpAffx.88752.1.A1_atCV254317--6e+0At3g59052CPuORF18 (Conserved peptide upstream open reading frame 18)C.G.S.X.
0.032e+034PtpAffx.54916.1.A1_atBP936306hypothetical protein-2e+0At4g16770iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsC.G.S.X.
0.022e+034PtpAffx.219120.1.S1_atpmrna34943nbs-lrr resistance protein /// hypothetical protein /// hypothetical protein /// hypothetical protein /// nbs-lrr resistance protein-2e+0At5g51810GA20OX2 (GIBBERELLIN 20 OXIDASE 2)C.G.S.X.
0.022e+034PtpAffx.219114.1.S1_x_atpmrna34937hypothetical protein-1e+0At3g17860JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3)C.G.S.X.
0.022e+034PtpAffx.219114.1.S1_atpmrna34937hypothetical protein-1e+0At3g17860JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3)C.G.S.X.
0.012e+034PtpAffx.211151.1.S1_s_atpmrna21917hypothetical protein-4e-92At4g27630GTG2 (GPCR-TYPE G PROTEIN 2)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.272e-1893Arabidopsis thalianaAt1g52510841682hydrolase, alpha/beta fold family proteinF:hydrolase activity, catalytic activity;P:unknown;C:chloroplast, chloroplast envelope;BOPMFA---C.G.S.X.
0.215e-2099Glycine maxGma.4553.1.A1_atBU081133--1e-48At1g52510hydrolase, alpha/beta fold family proteinC.G.S.X.
0.069e-1063Hordeum vulgareContig10144_s_atContig10144--1e-13At1g52510hydrolase, alpha/beta fold family proteinC.G.S.X.
0.072e-1067Oryza sativaOs04g0644600AK099966.1-Epoxide hydrolase family protein4e-21At1g52510hydrolase, alpha/beta fold family proteinC.G.S.X.
0.037e+032Triticum aestivumTaAffx.111149.1.S1_atCA647159--3e-6At4g00570malate oxidoreductase, putativeC.G.S.X.
0.482e-65248Vitis vinifera1616407_atCD715829hypothetical protein LOC100250971-7e-9At1g52510hydrolase, alpha/beta fold family proteinC.G.S.X.
0.033e+032Zea maysZmAffx.1027.1.A1_atAI881638--8e-1At1g0110060S acidic ribosomal protein P1 (RPP1A)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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