CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.1121.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.74 93.8 PtpAffx.1121.1.A1_at CV245225 - - 2e+0 At2g28105 - S.X. H.G.
0.17 29.1 PtpAffx.205881.1.S1_at pmrna11661 hypothetical protein - 1e+0 Atmg01130 - S.X. H.G.
0.15 25.3 PtpAffx.33230.2.S1_at CV242996 - - 8e-1 At3g08890 unknown protein S.X. H.G.
0.14 23.5 PtpAffx.210340.1.S1_at pmrna20334 hypothetical protein - 7e-3 At5g37550 unknown protein S.X. H.G.
0.14 23.5 PtpAffx.8544.1.S1_at CV236507 hypothetical protein - 6e-1 At3g55930 RNA splicing factor-related S.X. H.G.
0.09 14.6 PtpAffx.209924.1.S1_at pmrna19558 hypothetical protein - 1e+1 At5g14740 CA2 (CARBONIC ANHYDRASE 2) S.X. H.G.
0.09 14.6 PtpAffx.218134.1.S1_at pmrna33664 hypothetical protein - 4e-1 At5g08150 unknown protein S.X. H.G.
0.09 14.6 PtpAffx.133888.1.A1_at CV257885 - - 7e-1 At5g30495 - S.X. H.G.
0.09 14.6 PtpAffx.249.683.A1_at BP933394 - - 2e-32 At5g03240 UBQ3 (POLYUBIQUITIN 3) S.X. H.G.
0.08 12.9 PtpAffx.210456.1.S1_at pmrna20532 hypothetical protein - 4e-68 At3g18480 AtCASP (Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.2 98.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
7.3 98.2 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.1 98.1 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.1 98.1 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1 93.2 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.84 0 926 Ptp.6900.1.S1_at BU813336 hypothetical protein - 2e+0 At5g06410 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.84 0 926 Ptp.6900.1.S1_s_at BU813336 hypothetical protein - 2e+0 At5g06410 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.07 6e-13 75 PtpAffx.56798.1.A1_at CV251916 hypothetical protein - 1e+1 At5g37640 UBQ9 C.G. S.X.
0.02 2e+0 34 PtpAffx.8075.2.S1_at BU871128 hypothetical protein - 5e-3 At1g75510 transcription initiation factor IIF beta subunit (TFIIF-beta) family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.222425.1.S1_at pmrna39820 chromatin remodeling complex subunit - 3e-97 At5g22750 RAD5 C.G. S.X.
0.03 2e+0 34 PtpAffx.221802.1.S1_at pmrna38861 hypothetical protein - 7e-12 At2g32040 integral membrane transporter family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.213775.1.S1_at pmrna26895 hypothetical protein - 3e+0 At5g54010 glycosyltransferase family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.213360.1.S1_at pmrna26143 hypothetical protein - 2e-13 At3g13600 calmodulin-binding family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.211672.1.S1_at pmrna22880 hypothetical protein - 5e-3 At2g46980 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At2g28105 817356 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM - - - C.G. S.X.
0.04 2e+0 34 Glycine max GmaAffx.88671.1.A1_at CD417004 - - 7e-1 At4g16000 unknown protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HB22D03r_at HB22D03r - - 3e+0 At1g28270 RALFL4 (ralf-like 4) C.G. S.X.
0.02 3e+0 34 Oryza sativa OsAffx.897.1.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.109850.1.A1_s_at CA670125 - - 2e+0 At3g12930 - C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1621713_at CF514756 - - 2e-1 At5g57815 cytochrome c oxidase subunit 6b, putative C.G. S.X.
0.03 3e+0 32 Zea mays Zm.6806.1.A1_at AI396442 - - 2e-1 At3g45460 zinc ion binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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