CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.111048.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.111048.1.S1_at BU883776 hypothetical protein - 2e-94 At2g22480 PFK5 (PHOSPHOFRUCTOKINASE 5) S.X. H.G.
0.50 78.6 PtpAffx.11524.3.S1_at CV272635 hypothetical protein - 4e-28 At5g23250 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative S.X. H.G.
0.50 78.6 PtpAffx.55786.1.S1_s_at CA825382 hypothetical protein - 5e-35 At4g09510 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative S.X. H.G.
0.46 73.7 PtpAffx.7625.4.S1_a_at CX174671 hypothetical protein - 5e-24 At1g53240 malate dehydrogenase (NAD), mitochondrial S.X. H.G.
0.38 63.7 PtpAffx.5890.2.S1_at CF232083 hypothetical protein - 5e-3 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) S.X. H.G.
0.23 40.5 PtpAffx.5844.1.S1_at CX174548 hypothetical protein - 9e-5 At1g68680 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.1 97.6 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.7 97.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.6 96.2 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-3 46 Ptp.3127.1.S1_s_at AJ777838 hypothetical protein - 3e-52 At4g26270 PFK3 (PHOSPHOFRUCTOKINASE 3) C.G. S.X.
0.02 4e-1 38 PtpAffx.73713.1.S1_at BU834739 - - 2e-6 At5g61580 PFK4 (PHOSPHOFRUCTOKINASE 4) C.G. S.X.
0.01 4e-1 38 PtpAffx.32232.1.S1_at CV242293 hypothetical protein - 2e+0 At3g03690 UNE7 (unfertilized embryo sac 7) C.G. S.X.
0.01 4e-1 38 PtpAffx.32232.1.S1_a_at CV242293 hypothetical protein - 2e+0 At3g03690 UNE7 (unfertilized embryo sac 7) C.G. S.X.
0.02 1e+0 36 PtpAffx.5423.2.A1_a_at CV242446 hypothetical protein - 1e-13 At4g32840 PFK6 (PHOSPHOFRUCTOKINASE 6) C.G. S.X.
0.01 1e+0 36 PtpAffx.3539.1.S1_a_at AY438099.1 hypothetical protein - 1e-6 At3g25810 myrcene/ocimene synthase, putative C.G. S.X.
0.01 1e+0 36 PtpAffx.212581.1.S1_at pmrna24645 hypothetical protein - 5e-1 At3g05700 - C.G. S.X.
0.01 1e+0 36 PtpAffx.208938.1.S1_s_at pmrna17713 hypothetical protein - 9e-158 At1g68370 ARG1 (ALTERED RESPONSE TO GRAVITY 1) C.G. S.X.
0.01 1e+0 36 PtpAffx.208938.1.S1_at pmrna17713 hypothetical protein - 9e-158 At1g68370 ARG1 (ALTERED RESPONSE TO GRAVITY 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.53 2e-94 347 Arabidopsis thaliana At2g22480 816781 PFK5 (PHOSPHOFRUCTOKINASE 5) F:6-phosphofructokinase activity;P:glycolysis;C:6-phosphofructokinase complex, chloroplast;BOMFPAV - - - C.G. S.X.
0.34 3e-85 317 Glycine max GmaAffx.31381.1.S1_at BU546030 - - 5e-50 At2g22480 PFK5 (PHOSPHOFRUCTOKINASE 5) C.G. S.X.
0.12 2e-9 63 Hordeum vulgare Contig12502_at Contig12502 - - 2e-11 At2g22480 PFK5 (PHOSPHOFRUCTOKINASE 5) C.G. S.X.
0.25 6e-13 77 Oryza sativa Os08g0439000 9636.m03415 - Phosphofructokinase family protein 3e-9 At2g22480 PFK5 (PHOSPHOFRUCTOKINASE 5) C.G. S.X.
0.05 7e-8 59 Triticum aestivum TaAffx.108916.1.S1_at CD866848 - - 9e-8 At2g22480 PFK5 (PHOSPHOFRUCTOKINASE 5) C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1613367_at CB975443 - - 1e+0 At5g26930 zinc finger (GATA type) family protein C.G. S.X.
0.07 5e-4 46 Zea mays Zm.9445.1.A1_at CD446257 - - 2e-8 At2g22480 PFK5 (PHOSPHOFRUCTOKINASE 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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