Gene omics information

Query gene ID PtpAffx.109942.1.S1_s_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4471.9PtpAffx.109942.1.S1_s_atCN550009hypothetical protein-1e-4At1g01660U-box domain-containing proteinS.X.H.G.
0.4471.9Ptp.3368.1.S1_atCX656527hypothetical protein-1e-32At5g52240MSBP1 (membrane steroid binding protein 1)S.X.H.G.
0.1016.3PtpAffx.26288.1.S1_atCV271718--4e-15At1g75110RRA2 (REDUCED RESIDUAL ARABINOSE 2)S.X.H.G.
0.1016.3Ptp.777.1.A1_atCV236864--7e+0At4g05530IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1)S.X.H.G.
0.0812.9PtpAffx.454.3.S1_a_atCV281143hypothetical protein-2e-29At1g60680aldo/keto reductase family proteinS.X.H.G.
0.069.8PtpAffx.206659.1.S1_atpmrna13220hypothetical protein-1e-12At4g24490protein prenyltransferaseS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.497.0GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
4.996.5GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
4.796.3GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
4.195.5GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
4.095.3GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplar
4.095.3GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
3.293.5GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
3.193.2GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
3.092.9GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplar
2.791.8GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.4501146PtpAffx.202219.1.S1_atpmrna4442hypothetical protein-8e-8At2g45910protein kinase family protein / U-box domain-containing proteinC.G.S.X.
0.268e-25115Ptp.3802.1.A1_atCV260698hypothetical protein-4e-13At2g45910protein kinase family protein / U-box domain-containing proteinC.G.S.X.
0.268e-25115Ptp.3802.1.A1_a_atCV260698hypothetical protein-4e-13At2g45910protein kinase family protein / U-box domain-containing proteinC.G.S.X.
0.074e-1789PtpAffx.210731.1.S1_atpmrna21051hypothetical protein-1e-12At3g49060protein kinase family protein / U-box domain-containing proteinC.G.S.X.
0.184e-859PtpAffx.211544.1.S1_atpmrna22624hypothetical protein-5e-1At3g61390U-box domain-containing proteinC.G.S.X.
0.042e-654PtpAffx.85797.1.S1_s_atBU812872hypothetical protein-3e-1At1g01540protein kinase family proteinC.G.S.X.
0.032e+034PtpAffx.92409.1.S1_atBU818658hypothetical protein-4e-2At1g14860atnudt18 (Arabidopsis thaliana Nudix hydrolase homolog 18)C.G.S.X.
0.012e+034PtpAffx.4010.1.S1_atBP936269hypothetical protein-1e-5At2g27080harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedC.G.S.X.
0.012e+034PtpAffx.225186.1.S1_atpmrna44340tir-nbs-lrr resistance protein-3e-2At3g51560ATP binding / protein binding / transmembrane receptorC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.101e-448Arabidopsis thalianaAt1g01660839461U-box domain-containing proteinF:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;MOBFPAV---C.G.S.X.
0.162e-448Glycine maxGma.7881.1.S1_atAW200882--2e-1At4g07932unknown proteinC.G.S.X.
0.048e-134Hordeum vulgareHVSMEc0016J13f_atHVSMEc0016J13f--3e-33Atcg00350-C.G.S.X.
0.062e-448Oryza sativaOs06g0163000AK072504.1-Heat shock protein STI (Stress inducible protein)(GmSTI)1e-3At1g01660U-box domain-containing proteinC.G.S.X.
0.037e+032Triticum aestivumTaAffx.37566.1.A1_atBJ273571--4e-2At5g11500unknown proteinC.G.S.X.
0.085e-1063Vitis vinifera1621263_atCA818600hypothetical protein LOC100267999-3e-8At2g45910protein kinase family protein / U-box domain-containing proteinC.G.S.X.
0.047e-134Zea maysZmAffx.1078.1.S1_atAI948227--3e-2At3g22845emp24/gp25L/p24 protein-relatedC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage