Gene omics information

Query gene ID	PtpAffx.109937.1.A1_at
Gene name	NAC domain protein, IPR003441
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	96.0	PtpAffx.109937.1.A1_at	CK097441	NAC domain protein, IPR003441	-	4e-1	At4g24700	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.811.1.S1_at	CK097682	hypothetical protein	-	1e-9	At3g01680	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.811.1.S1_x_at	CK097682	hypothetical protein	-	1e-9	At3g01680	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.811.1.S1_s_at	CK097682	hypothetical protein	-	1e-9	At3g01680	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	Ptp.186.1.A1_s_at	CK087302	-	-	7e+0	At3g56270	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.45735.1.S1_at	CV230334	hypothetical protein	-	5e-1	At1g06620	2-oxoglutarate-dependent dioxygenase, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.2	99.0	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
9.9	98.9	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
9.7	98.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	2e-34	147	PtpAffx.211500.1.S1_s_at	pmrna22537	NAC domain protein, IPR003441 /// NAC domain protein, IPR003441 /// hypothetical protein	-	2e-1	At4g24700	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	2e-34	147	PtpAffx.211500.1.S1_at	pmrna22537	NAC domain protein, IPR003441	-	2e-1	At4g24700	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-5	50	PtpAffx.35533.1.S1_at	CV258042	NAC domain protein, IPR003441	-	2e+0	At5g38100	methyltransferase-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	9e-3	42	PtpAffx.18964.1.A1_at	CV227265	NAC domain protein, IPR003441	-	4e-2	At2g04560	transferase, transferring glycosyl groups	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.211418.1.S1_at	pmrna22375	hypothetical protein	-	5e-9	At3g49710	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	5e-1	36	PtpAffx.111725.1.S1_at	BU819606	NAC domain protein, IPR003441	-	5e+0	At5g37050	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	Ptp.2475.1.S1_at	CV245364	-	-	4e-111	At1g69830	AMY3 (ALPHA-AMYLASE-LIKE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.79585.1.S1_at	CK091868	hypothetical protein	-	3e-6	At5g03110	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.73932.1.A1_at	DN490898	hypothetical protein	-	4e-1	At4g17785	MYB39 (myb domain protein 39)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	36	Arabidopsis thaliana	At4g24700	828572	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.91339.1.S1_at	CF807064	-	-	1e-9	At1g14720	XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2)	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HU13F23r_at	HU13F23r	-	-	2e+0	At3g09510	nucleic acid binding	C.G.	S.X.	Please select
0.02	3e+0	34	Oryza sativa	OsAffx.32259.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Triticum aestivum	Ta.5959.1.S1_at	BJ293018	-	-	8e-1	At2g19800	MIOX2 (MYO-INOSITOL OXYGENASE 2)	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1615118_at	CF373171	hypothetical protein LOC100241584	-	1e+0	At4g36620	zinc finger (GATA type) family protein	C.G.	S.X.	Please select
0.04	2e-1	36	Zea mays	ZmAffx.1137.1.A1_at	AW331515	-	-	3e+1	At5g63000	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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