Gene omics information

Query gene ID	PtpAffx.10990.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	94.1	PtpAffx.10990.1.S1_at	CV271402	hypothetical protein	-	6e-82	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.221497.1.S1_at	pmrna38406	hypothetical protein	-	2e-74	At1g80030	DNAJ heat shock protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.159323.1.A1_at	CV277573	hypothetical protein	-	1e-1	At5g02780	In2-1 protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.26369.1.S1_s_at	CK091069	hypothetical protein	-	9e-31	At3g63520	CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.200366.1.S1_at	pmrna730	hypothetical protein	-	1e-14	At1g64430	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.7692.1.A1_at	BP934366	hypothetical protein	-	2e+0	At5g06890	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.5738.1.S1_at	CV236324	hypothetical protein	-	9e-12	At4g01995	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.0	97.5	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.5	96.1	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9	95.1	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.8	94.9	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4	94.0	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3	93.7	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	0	977	Ptp.1178.1.A1_at	CV265898	hypothetical protein	-	2e-71	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.54	0	847	PtpAffx.10990.2.S1_a_at	BI068838	hypothetical protein	-	7e-40	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.54	0	847	PtpAffx.10990.2.S1_at	BI068838	hypothetical protein	-	7e-40	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	8e-8	59	PtpAffx.206726.1.S1_at	pmrna13352	-	-	1e-4	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	2e-5	52	Ptp.6774.1.A1_s_at	CV266335	-	-	4e-17	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	1e-3	46	Ptp.4360.1.S1_s_at	BU831376	hypothetical protein	-	4e-60	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	1e-3	46	Ptp.2633.1.S1_at	CK095904	hypothetical protein	-	2e-75	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	36	PtpAffx.9880.1.S1_at	BU887905	-	-	2e+0	At3g10912	CPuORF63 (Conserved peptide upstream open reading frame 63)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.37890.1.A1_at	CX656513	hypothetical protein	-	6e-7	At1g64460	phosphatidylinositol 3- and 4-kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.52	6e-82	305	Arabidopsis thaliana	At1g67280	843048	lactoylglutathione lyase, putative / glyoxalase I, putative	F:lactoylglutathione lyase activity, metal ion binding;P:response to cold, carbohydrate metabolic process;C:thylakoid, thylakoid lumen, stromule, chloroplast, chloroplast stroma;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	1e-6	56	Glycine max	Gma.5683.2.S1_at	CA935387	-	-	7e-75	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please select
0.29	4e-32	139	Hordeum vulgare	Contig4938_s_at	Contig4938	-	-	8e-47	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please select
0.27	1e-59	232	Oryza sativa	Os.22487.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	7e-26	119	Triticum aestivum	Ta.23813.1.S1_at	CK157489	-	-	2e-37	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please select
0.44	4e-120	430	Vitis vinifera	1609873_at	CB341501	hypothetical protein LOC100247523	-	2e-69	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please select
0.38	2e-58	226	Zea mays	Zm.17590.1.A1_at	CK144918	hypothetical protein LOC100191237	-	3e-46	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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