CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.108515.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.33 57.5 PtpAffx.108515.1.A1_at CV237662 - - 3e+0 At5g19240 unknown protein S.X. H.G.
0.23 40.5 PtpAffx.200282.1.S1_at pmrna560 hypothetical protein - 6e-1 At2g25840 OVA4 (ovule abortion 4) S.X. H.G.
0.23 40.5 PtpAffx.3423.1.A1_at DN491762 hypothetical protein - 2e-14 At2g40930 UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5) S.X. H.G.
0.17 29.1 PtpAffx.215976.1.S1_at pmrna30470 hypothetical protein - 4e-25 At3g07330 ATCSLC6 (CELLULOSE-SYNTHASE LIKE C6) S.X. H.G.
0.08 12.9 PtpAffx.134623.1.A1_at CV228876 - - 2e+0 At5g39870 unknown protein S.X. H.G.
0.03 5.2 PtpAffx.210704.1.S1_at pmrna20996 hypothetical protein - 1e+0 At5g62740 band 7 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.7 98.9 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.8 98.0 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.4 97.7 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.6 96.2 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8 92.1 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 1e-46 186 Ptp.6346.1.A1_x_at CV251631 - - 5e-7 At1g72160 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein C.G. S.X.
0.43 1e-46 186 Ptp.6346.1.A1_at CV251631 hypothetical protein - 5e-7 At1g72160 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein C.G. S.X.
0.22 7e-27 121 PtpAffx.38673.1.A1_at CV233820 hypothetical protein - 7e-3 At1g72160 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein C.G. S.X.
0.03 3e-1 36 PtpAffx.205694.1.S1_at pmrna11246 hypothetical protein - 3e-8 At5g28150 unknown protein C.G. S.X.
0.03 3e-1 36 PtpAffx.201729.1.S1_at pmrna3435 hypothetical protein - 5e-7 At5g28150 unknown protein C.G. S.X.
0.03 5e+0 32 PtpAffx.82060.1.A1_at CV262208 - - 5e+0 Atmg00140 - C.G. S.X.
0.03 5e+0 32 PtpAffx.4116.2.A1_at CV270343 hypothetical protein - 1e+0 At4g11080 high mobility group (HMG1/2) family protein C.G. S.X.
0.03 5e+0 32 PtpAffx.224516.1.S1_s_at pmrna43133 hypothetical protein - 2e-9 At1g22640 MYB3 (MYB DOMAIN PROTEIN 3) C.G. S.X.
0.03 5e+0 32 PtpAffx.224516.1.S1_at pmrna43133 hypothetical protein - 2e-9 At1g22640 MYB3 (MYB DOMAIN PROTEIN 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 32 Arabidopsis thaliana At5g19240 832044 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P - - - C.G. S.X.
0.06 3e-1 36 Glycine max GmaAffx.31177.1.S1_at BE807779 - - 6e+0 At5g08565 positive transcription elongation factor/ zinc ion binding C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig11062_at Contig11062 - - 1e+0 At2g13660 unknown protein C.G. S.X.
0.03 7e+0 32 Oryza sativa Os12g0500600 9640.m03064 - - 2e+0 At1g04070 TOM22-I (TRANSLOCASE OF OUTER MEMBRANE 22-I) C.G. S.X.
0.04 1e+1 30 Triticum aestivum TaAffx.9264.1.S1_at CA605452 - - 2e+0 At4g01230 reticulon family protein (RTNLB7) C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1614793_at CB005321 hypothetical protein LOC100255856 - 2e+0 At5g66053 unknown protein C.G. S.X.
0.04 4e-1 34 Zea mays ZmAffx.863.1.A1_at AI770721 - - 1e+1 Atcg01300 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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