CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.108322.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 93.6 PtpAffx.108322.1.A1_at CV245001 - - 9e-1 At5g49330 AtMYB111 (myb domain protein 111) S.X. H.G.
0.50 78.6 PtpAffx.56205.1.A1_at CV273765 hypothetical protein - 8e-1 At4g02850 phenazine biosynthesis PhzC/PhzF family protein S.X. H.G.
0.40 67.0 PtpAffx.200677.1.S1_at pmrna1316 hypothetical protein - 2e+0 At5g47410 unknown protein S.X. H.G.
0.36 61.6 Ptp.718.1.A1_at CK088093 - - 2e+0 At3g45252 - S.X. H.G.
0.29 50.5 PtpAffx.212412.1.S1_at pmrna24311 - - 7e-13 At1g53270 ABC transporter family protein S.X. H.G.
0.10 16.3 PtpAffx.224219.1.S1_at pmrna42564 hypothetical protein - 1e-1 At5g44390 FAD-binding domain-containing protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.8 99.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
14.6 99.5 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
11.7 99.2 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.2 97.6 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.4 97.0 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.8 94.9 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3 89.8 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 9e-2 38 PtpAffx.224231.1.S1_at pmrna42597 hypothetical protein - 7e-123 At1g43850 SEU (seuss) C.G. S.X.
0.04 9e-2 38 Ptp.3649.1.A1_at DN492435 - - 2e+1 At5g51860 MADS-box protein (AGL72) C.G. S.X.
0.03 3e-1 36 PtpAffx.40916.1.S1_at BU826440 - - 2e+0 At5g17190 unknown protein C.G. S.X.
0.01 3e-1 36 PtpAffx.203480.1.S1_at pmrna6926 multidrug resistance protein ABC transporter family - 1e-44 At2g07680 ATMRP11 C.G. S.X.
0.02 1e+0 34 PtpAffx.9842.1.S1_at DN487177 hypothetical protein - 2e+0 At4g35250 vestitone reductase-related C.G. S.X.
0.01 1e+0 34 PtpAffx.210810.1.S1_at pmrna21224 hypothetical protein - 6e-3 At3g52530 protein kinase family protein C.G. S.X.
0.01 1e+0 34 PtpAffx.209454.1.S1_at pmrna18730 hypothetical protein - 8e-58 At5g23450 ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1) C.G. S.X.
0.02 1e+0 34 PtpAffx.14318.1.A1_a_at CA927791 hypothetical protein - 1e-26 At3g25530 GLYR1 (GLYOXYLATE REDUCTASE 1) C.G. S.X.
0.04 1e+0 34 PtpAffx.102055.1.A1_at CV243889 - - 4e+0 At3g46560 TIM9 C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-1 34 Arabidopsis thaliana At5g49330 834993 AtMYB111 (myb domain protein 111) Member of the R2R3 factor gene family. - - - C.G. S.X.
0.04 5e-3 42 Glycine max HgAffx.18699.1.S1_at CB379706 - - 5e+0 At3g28220 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
0.03 1e-1 36 Hordeum vulgare Contig16785_at Contig16785 - - 1e+0 At3g48330 PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1) C.G. S.X.
0.03 2e+0 34 Oryza sativa Os03g0110600 9631.m00106 - Peptidoglycan-binding LysM domain containingprotein 3e-1 At1g30750 unknown protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.9571.1.S1_at CA594679 - - 9e+0 At5g65090 BST1 (BRISTLED 1) C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1620737_at CB976283 - - 2e+0 At4g36170 unknown protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.6902.1.A1_at CF011952 - - 5e-1 At3g46760 protein kinase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage