Gene omics information

Query gene ID PtpAffx.10708.1.S1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6991.5PtpAffx.10708.1.S1_atCX178949--2e-2At3g06490MYB108 (myb domain protein 108)S.X.H.G.
0.5984.9PtpAffx.128904.1.S1_atDN494247hypothetical protein-7e-18At2g35690ACX5 (ACYL-COA OXIDASE 5)S.X.H.G.
0.5380.5PtpAffx.124540.1.S1_atAJ771260hypothetical protein-8e-2At3g08505zinc finger (CCCH-type/C3HC4-type RING finger) family proteinS.X.H.G.
0.5380.5PtpAffx.212274.1.S1_s_atpmrna24061hypothetical protein-1e-1At4g30390unknown proteinS.X.H.G.
0.4875.4PtpAffx.12507.2.S1_s_atCF936851hypothetical protein-7e-62At4g17730SYP23 (SYNTAXIN OF PLANTS 23)S.X.H.G.
0.4774.6PtpAffx.118041.1.S1_atCN524342--2e-18At3g24515UBC37 (ubiquitin-conjugating enzyme 37)S.X.H.G.
0.4167.7PtpAffx.161118.1.S1_s_atCK319174hypothetical protein-6e-18At4g16760ACX1 (ACYL-COA OXIDASE 1)S.X.H.G.
0.3964.6PtpAffx.137984.1.S1_s_atCK102321hypothetical protein-7e-15At1g71410protein kinase family proteinS.X.H.G.
0.3863.7PtpAffx.135416.1.S1_s_atCN517682hypothetical protein-6e-2At5g50650WD-40 repeat family protein / St12p protein, putativeS.X.H.G.
0.3762.3PtpAffx.10720.2.S1_atAJ773949hypothetical protein-3e-1At2g39650unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
9.298.8GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
5.897.4GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
4.395.8GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
4.095.3GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
3.995.1GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
3.794.7GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
3.193.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
2.892.1GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
2.691.3GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplar
2.490.4GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.322e-83309PtpAffx.212809.1.S1_s_atpmrna25069hypothetical protein-7e-2At1g12970leucine-rich repeat family proteinC.G.S.X.
0.322e-83309PtpAffx.212809.1.S1_atpmrna25069hypothetical protein-7e-2At1g12970leucine-rich repeat family proteinC.G.S.X.
0.033e-240PtpAffx.81805.1.S1_atCV272654hypothetical protein-5e-4At5g43210endo/excinuclease amino terminal domain-containing proteinC.G.S.X.
0.013e-240PtpAffx.207761.1.S1_atpmrna15442hypothetical protein-3e-17At5g05570transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.023e-240PtpAffx.200653.1.S1_s_atpmrna1269PAF1 complex component-7e-5At1g79730ELF7 (EARLY FLOWERING 7)C.G.S.X.
0.041e-138PtpAffx.4395.4.A1_atCX182030hypothetical protein-2e-5At2g43970La domain-containing proteinC.G.S.X.
0.031e-138PtpAffx.221607.1.S1_atpmrna38578hypothetical protein-4e-2At5g37930seven in absentia (SINA) family proteinC.G.S.X.
0.021e-138PtpAffx.210072.1.S1_atpmrna19839hypothetical protein-5e-8At3g14370WAG2C.G.S.X.
0.031e-138PtpAffx.204305.1.S1_atpmrna8468hypothetical protein-5e-10At4g38600KAK (KAKTUS)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-240Arabidopsis thalianaAt3g06490819827MYB108 (myb domain protein 108)putative transcription factor MYB108 (MYB108) mRNA,---C.G.S.X.
0.063e-550Glycine maxGmaAffx.26908.1.S1_atBF425834--5e-6At5g09750HEC3 (HECATE 3)C.G.S.X.
0.045e-134Hordeum vulgareHV09G08u_atHV09G08u--4e-1At4g15150glycine-rich proteinC.G.S.X.
0.045e-136Oryza sativaOsAffx.28359.1.S1_at---0C.G.S.X.
0.042e-240Triticum aestivumTaAffx.65594.1.S1_atBJ236677--1e+0At5g43410ethylene-responsive factor, putativeC.G.S.X.
0.065e-340Vitis vinifera1616954_s_atBQ794939hypothetical protein LOC100252003-2e+1At5g04470SIM (SIAMESE)C.G.S.X.
0.031e-136Zea maysZm.18388.1.A1_atCB604567hypothetical protein LOC100273514-1e-1At3g46620zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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