CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.106138.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.106138.1.S1_at BU889364 - - 2e+0 At4g17585 unknown protein S.X. H.G.
0.50 78.6 PtpAffx.144008.1.S1_at BU833721 hypothetical protein - 5e-33 At1g30440 phototropic-responsive NPH3 family protein S.X. H.G.
0.43 69.7 PtpAffx.9868.1.S1_at DN486485 hypothetical protein - 3e-3 At3g16565 ATP binding / alanine-tRNA ligase/ nucleic acid binding / nucleotide binding S.X. H.G.
0.40 67.0 Ptp.2544.1.A1_at CK087698 hypothetical protein - 1e-12 At3g24660 TMKL1 (transmembrane kinase-like 1) S.X. H.G.
0.40 67.0 PtpAffx.11483.2.A1_at CK106946 hypothetical protein - 7e-2 At2g21790 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) S.X. H.G.
0.14 23.5 PtpAffx.201388.1.S1_at pmrna2738 hypothetical protein - 2e-21 At5g11720 alpha-glucosidase 1 (AGLU1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.5 98.8 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.5 98.6 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.1 98.1 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.9 97.4 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.8 97.4 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.8 97.4 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.8 97.4 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.5 97.1 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.4 97.0 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-1 34 PtpAffx.207958.1.S1_at pmrna15801 hypothetical protein - 1e-1 At5g49320 unknown protein C.G. S.X.
0.03 6e-1 34 PtpAffx.203204.1.S1_at pmrna6348 hypothetical protein - 4e-1 At1g56420 unknown protein C.G. S.X.
0.03 6e-1 34 PtpAffx.201919.1.S1_at pmrna3821 hypothetical protein - 2e+0 At4g14695 unknown protein C.G. S.X.
0.01 3e+0 32 PtpAffx.8114.1.S1_at CV237220 - - 5e-24 At4g30960 SIP3 (SOS3-INTERACTING PROTEIN 3) C.G. S.X.
0.09 3e+0 32 PtpAffx.77916.1.A1_at CK088548 - - 3e+0 At2g29570 PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) C.G. S.X.
0.02 3e+0 32 PtpAffx.24003.1.A1_at CV245118 hypothetical protein - 8e-10 At4g38160 pde191 (pigment defective 191) C.G. S.X.
0.01 3e+0 32 PtpAffx.219819.1.S1_at pmrna35948 hypothetical protein - 8e-27 At1g79620 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.04 3e+0 32 PtpAffx.216708.1.S1_at pmrna31662 hypothetical protein - 4e-1 At1g01130 unknown protein C.G. S.X.
0.01 3e+0 32 PtpAffx.214267.1.S1_at pmrna27767 glutamate-gated kainate-type ion channel receptor subunit GluR5 - 5e-3 At5g11180 ATGLR2.6 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 32 Arabidopsis thaliana At4g17585 827476 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.04 3e+0 32 Glycine max GmaAffx.56750.1.S1_at CD395876 - - 4e+0 At5g20090 unknown protein C.G. S.X.
0.07 4e+0 30 Hordeum vulgare HVSMEc0010M05r2_at HVSMEc0010M05r2 - - 6e+0 At5g64770 unknown protein C.G. S.X.
0.03 9e-1 34 Oryza sativa Os12g0498500 9640.m03045 - Heat shock protein DnaJ, N-terminal domaincontaining protein 3e-5 At5g21430 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.04 2e+0 32 Triticum aestivum Ta.13284.1.S1_at CA737418 - - 1e+0 At5g29613 unknown protein C.G. S.X.
0.04 5e-1 32 Vitis vinifera 1611555_at CB971903 hypothetical protein LOC100267822 - 6e-1 At1g66400 calmodulin-related protein, putative C.G. S.X.
0.04 3e+0 30 Zea mays Zm.18305.1.A1_at CO533683 Isocitrate lyase - 1e-9 At3g21720 ICL (ISOCITRATE LYASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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