Gene omics information

Query gene ID	PtpAffx.104325.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	88.1	PtpAffx.104325.1.S1_at	CA929650	hypothetical protein	-	3e-85	At3g16620	ATTOC120	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.111008.1.S1_at	BU886443	hypothetical protein	-	2e-9	At2g15560	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.207569.1.S1_at	pmrna15026	hypothetical protein	-	1e+0	At4g03180	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.113391.1.S1_at	BI129751	hypothetical protein	-	4e+0	At4g19003	VPS25	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.86064.1.S1_at	CV279515	hypothetical protein	-	3e-24	At5g65720	NFS1	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	Ptp.5256.2.S1_s_at	DN493311	hypothetical protein	-	5e-46	At1g20920	DEAD box RNA helicase, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	97.4	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	4e-51	202	PtpAffx.215022.1.S1_at	pmrna28968	hypothetical protein	-	2e-6	At3g16620	ATTOC120	C.G.	S.X.	Please selecteFP Browser (expression)
0.30	4e-51	202	PtpAffx.215022.1.S1_x_at	pmrna28968	hypothetical protein	-	2e-6	At3g16620	ATTOC120	C.G.	S.X.	Please selecteFP Browser (expression)
0.29	5e-35	149	PtpAffx.210409.1.S1_at	pmrna20456	hypothetical protein	-	2e-4	At3g16620	ATTOC120	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	4e-20	99	PtpAffx.218816.1.S1_at	pmrna34554	hypothetical protein	-	2e+0	At4g03280	PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-2	40	PtpAffx.2360.3.S1_a_at	CX179099	hypothetical protein	-	2e-18	At4g39280	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-2	40	PtpAffx.2360.3.S1_at	CX179099	hypothetical protein	-	2e-18	At4g39280	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-2	40	PtpAffx.223278.1.S1_at	pmrna41196	hypothetical protein	-	1e-55	At5g49880	mitotic checkpoint family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e-1	38	PtpAffx.202105.1.S1_at	pmrna4204	hypothetical protein	-	1e-3	At3g60380	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e-1	38	PtpAffx.202105.1.S1_s_at	pmrna4204	hypothetical protein	-	1e-3	At3g60380	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	3e-85	315	Arabidopsis thaliana	At3g16620	820913	ATTOC120	component of TOC complex, plastid protein import machinery.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	9e-6	52	Glycine max	GmaAffx.36104.1.S1_at	BI701544	-	-	5e-6	At3g16620	ATTOC120	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	rbags1j03_at	rbags1j03	-	-	1e-1	At1g57765	unknown protein	C.G.	S.X.	Please select
0.09	3e-9	63	Oryza sativa	Os10g0548800	AK072270.1	-	Chloroplast outer envelope protein-like(Chloroplast outer envelope membrane-associated proteinToc120)	2e-18	At3g16620	ATTOC120	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Triticum aestivum	TaAffx.80800.1.S1_at	CA692403	-	-	6e-1	At2g40440	BTB/POZ domain-containing protein	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1608806_at	CB342648	-	-	4e+0	At5g03495	nucleotide binding	C.G.	S.X.	Please select
0.04	1e-8	59	Zea mays	Zm.5881.1.A1_at	CA401815	-	-	9e-8	At2g16640	TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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