Gene omics information

Query gene ID	PtpAffx.104205.1.A1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.43	69.7	PtpAffx.104205.1.A1_at	CV277856	-	-	1e-25	At5g59690	histone H4	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.75907.1.A1_at	CV252889	heavy metal ATPase	-	6e-12	At5g44790	RAN1 (RESPONSIVE-TO-ANTAGONIST 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.993.1.S1_at	AJ767562	hypothetical protein	-	9e-101	At3g04400	emb2171 (embryo defective 2171)	S.X.	H.G.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.58520.1.S1_at	CK091727	hypothetical protein	-	1e-18	At3g16630	KINESIN-13A	S.X.	H.G.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.249.163.A1_at	CV277998	-	-	2e+0	At1g16510	auxin-responsive family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.127990.1.A1_at	CV236342	-	-	2e-2	At2g27720	60S acidic ribosomal protein P2 (RPP2A)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.9	99.7	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.8	94.9	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3	89.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	1e-121	436	Ptp.6609.1.S1_at	BU884738	histone H4	-	2e-37	At5g59690	histone H4	C.G.	S.X.	Please selecteFP Browser (expression)
0.54	5e-87	321	Ptp.4608.3.S1_at	CV261168	histone H4 /// histone H4	-	1e-11	At3g46320	histone H4	C.G.	S.X.	Please selecteFP Browser (expression)
0.48	2e-58	226	Ptp.7816.1.S1_at	CA821551	histone H4 /// histone H4	-	2e-64	At1g07820	histone H4	C.G.	S.X.	Please selecteFP Browser (expression)
0.38	1e-44	180	Ptp.6669.1.S1_at	CX170418	histone H4	-	5e-55	At1g07660	histone H4	C.G.	S.X.	Please selecteFP Browser (expression)
0.45	4e-44	178	PtpAffx.4633.3.S1_at	CV225507	-	-	2e-57	At1g07820	histone H4	C.G.	S.X.	Please selecteFP Browser (expression)
0.30	2e-39	163	Ptp.4468.1.S1_at	CV256319	histone H4	-	2e-24	At2g28740	HIS4	C.G.	S.X.	Please selecteFP Browser (expression)
0.44	2e-36	153	PtpAffx.4633.2.S1_at	CA823688	-	-	9e-47	At1g07820	histone H4	C.G.	S.X.	Please selecteFP Browser (expression)
0.40	2e-33	143	PtpAffx.4633.1.S1_s_at	CV251103	histone H4 /// histone H4	-	2e-21	At2g28740	HIS4	C.G.	S.X.	Please selecteFP Browser (expression)
0.34	1e-28	127	PtpAffx.202139.1.S1_at	pmrna4274	hypothetical protein	-	2e-12	At1g07820	histone H4	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	1e-25	117	Arabidopsis thaliana	At5g59690	836090	histone H4	F:DNA binding;P:nucleosome assembly;C:thylakoid;MOPFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.43	2e-36	153	Glycine max	Gma.17699.1.S1_at	CD400295	-	-	7e-52	At3g46320	histone H4	C.G.	S.X.	Please select
0.41	2e-31	135	Hordeum vulgare	Contig159_at	Contig159	-	-	8e-17	At5g59690	histone H4	C.G.	S.X.	Please select
0.36	3e-24	113	Oryza sativa	OsAffx.24745.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.35	7e-30	131	Triticum aestivum	Ta.10329.16.S1_x_at	BJ309223	-	-	3e-20	At5g59690	histone H4	C.G.	S.X.	Please select
0.43	4e-47	186	Vitis vinifera	1613041_at	CF373004	hypothetical protein LOC100266695	-	2e-27	At3g46320	histone H4	C.G.	S.X.	Please select
0.41	1e-32	139	Zea mays	Zm.1208.3.A1_a_at	BM268655	Histone H4	-	4e-19	At5g59690	histone H4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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