Gene omics information

Query gene ID	PtpAffx.103751.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	92.6	PtpAffx.103751.1.A1_at	CK094169	hypothetical protein	-	4e+0	At5g30495	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.11916.2.S1_a_at	CK107522	MIKC mads-box transcription factor	-	1e-5	At2g22540	SVP (SHORT VEGETATIVE PHASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	Ptp.2475.1.S1_at	CV245364	-	-	4e-111	At1g69830	AMY3 (ALPHA-AMYLASE-LIKE 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.213439.1.S1_at	pmrna26275	hypothetical protein	-	2e+0	At5g24920	AtGDU5 (Arabidopsis thaliana GLUTAMINE DUMPER 5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.221044.1.S1_s_at	pmrna37596	hypothetical protein	-	2e+0	At2g30570	PSBW (PHOTOSYSTEM II REACTION CENTER W)	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.225636.1.S1_s_at	pmrna45115	glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5	-	9e-3	At2g29110	ATGLR2.8	S.X.	H.G.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.211313.1.S1_at	pmrna22182	hypothetical protein	-	7e-4	At1g52855	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
31.6	99.9	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
20.6	99.8	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
8.4	98.6	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.8	98.0	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.4	82.3	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.4	82.3	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.2	79.6	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	4e-152	537	PtpAffx.205931.1.S1_at	pmrna11771	hypothetical protein	-	1e-1	At5g47740	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	3e-14	79	PtpAffx.213113.1.S1_at	pmrna25661	hypothetical protein	-	2e+0	At2g36485	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	36	PtpAffx.124839.1.A1_at	CV283832	hypothetical protein	-	2e-22	At2g01440	ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	36	Ptp.942.1.S1_s_at	CK089614	hypothetical protein	-	4e-26	At2g01440	ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	36	Ptp.942.1.S1_at	CK089614	hypothetical protein	-	4e-26	At2g01440	ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.37576.1.A1_at	CV245783	-	-	1e+0	At2g31700	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	1e+0	34	PtpAffx.211695.1.S1_at	pmrna22923	hypothetical protein	-	9e+0	At5g25480	DNMT2 (DNA METHYLTRANSFERASE-2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.204503.1.S1_at	pmrna8837	hypothetical protein	-	2e-7	At4g38440	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.1199.1.A1_at	CK319205	hypothetical protein	-	1e-20	At5g38470	DNA repair protein RAD23, putative	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At5g30495	833073	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e+0	32	Glycine max	HgAffx.6020.1.S1_at	CB826191	-	-	1e+0	At3g46720	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select
0.03	5e-1	34	Hordeum vulgare	rbags23p07_at	rbags23p07	-	-	1e+0	At5g41760	nucleotide-sugar transporter family protein	C.G.	S.X.	Please select
0.04	5e-1	36	Oryza sativa	Os.27085.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e+0	32	Triticum aestivum	TaAffx.91096.1.A1_at	BQ238273	-	-	1e+0	At1g26798	Expressed protein	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1614804_at	CB968667	-	-	4e+0	At5g39850	40S ribosomal protein S9 (RPS9C)	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.9574.1.A1_at	BM332377	hypothetical protein LOC100275325	-	4e+0	At5g16130	40S ribosomal protein S7 (RPS7C)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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