Gene omics information

Query gene ID	PtpAffx.101690.1.A1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	PtpAffx.101690.1.A1_at	CV255238	-	-	9e-1	At5g41401	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.220781.1.S1_at	pmrna37212	cytochrome P450	-	2e+0	At2g19850	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.42652.1.S1_at	CV268229	histone H3	-	1e-1	At1g01370	HTR12	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.201290.1.S1_at	pmrna2561	hypothetical protein	-	7e-16	At5g55820	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.29085.1.A1_s_at	DN489411	-	-	4e+0	At1g75700	HVA22G (HVA22-LIKE PROTEIN G)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.225505.1.S1_at	pmrna44896	hypothetical protein	-	5e-35	At2g36400	AtGRF3 (GROWTH-REGULATING FACTOR 3)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
40.1	100.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.2	98.1	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.4	82.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	4e-13	73	PtpAffx.155671.1.S1_at	CF233334	hypothetical protein	-	6e-3	At4g26150	CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	8e-2	36	PtpAffx.114764.1.A1_at	CV244671	-	-	2e+0	At2g43550	trypsin inhibitor, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	3e-1	34	PtpAffx.108095.1.A1_at	CV254647	-	-	3e-1	At3g42180	catalytic/ transferase, transferring glycosyl groups	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	32	PtpAffx.75296.1.A1_at	CV275668	-	-	2e+0	At4g14410	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	32	PtpAffx.51612.1.A1_at	BP936141	-	-	2e-16	At1g57770	amine oxidase family	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	32	PtpAffx.220061.1.S1_at	pmrna36345	hypothetical protein	-	2e+0	At5g47150	YDG/SRA domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	1e+0	32	PtpAffx.213984.1.S1_at	pmrna27249	hypothetical protein	-	2e-20	At5g15510	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	1e+0	32	PtpAffx.211201.1.S1_at	pmrna22013	hypothetical protein	-	2e-2	At5g54850	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	32	Ptp.2612.1.S1_a_at	BU874689	hypothetical protein	-	2e-15	At2g22425	peptidase	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	9e-1	32	Arabidopsis thaliana	At5g41401	6240394	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	5e+0	30	Glycine max	GmaAffx.6309.1.S1_at	CA801810	-	-	9e-7	At5g22350	ELM1 (ELONGATED MITOCHONDRIA 1)	C.G.	S.X.	Please select
0.13	1e-1	34	Hordeum vulgare	HD09M17r_at	HD09M17r	-	-	1e+0	At1g24480	methyltransferase	C.G.	S.X.	Please select
0.06	1e-1	36	Oryza sativa	Os.11226.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	4e+0	30	Triticum aestivum	TaAffx.56863.1.S1_x_at	CA642411	-	-	6e-1	At3g53690	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.06	3e-1	32	Vitis vinifera	1611285_s_at	CA809190	similar to DNA-binding protein	-	3e-22	At4g31550	WRKY11	C.G.	S.X.	Please select
0.06	2e+0	30	Zea mays	ZmAffx.1412.1.S1_at	40794996-87	-	-	2e-139	At2g07751	NADH-ubiquinone oxidoreductase chain 3, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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